Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 18313345 . T A CCDS12372.1:NM_002866.4:c.206aAg>aTg_NP_002857.1:p.69K>M Homo sapiens RAB3A, member RAS oncogene family (RAB3A), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1zbd 1 P63012 98.49 2e-148 X-RAY
 1999-04-02 LYS A:55 A:69 84.0 0.42 E -141.9 142.5 67.0 0.335 0.085 B:P47709:0.085
 HOH
 6.852
 N
 O
6y7g 1 Q96E17 84.09 2e-141 X-RAY
 2021-03-31 LYS A:77 A:77 86.0 0.43 E -59.2 143.7 86.0 0.43 0.0 HOH
 6.287
 NZ
 O
LYS B:77 B:77 91.0 0.455 E -63.8 139.8 NA NA NA
3rab 1 P63012 100.0 1e-125 X-RAY
 1999-04-16 LYS A:52 A:69 93.0 0.465 E -117.8 146.7 93.0 0.465 0.0 HOH
 3.131
 CE
 O
4rkf 1 P25228 82.54 1e-117 X-RAY
 2014-12-10 LYS A:70 A:68 93.0 0.465 E -121.8 152.3 93.0 0.465 0.0 HOH
 2.745
 NZ
 O
LYS B:70 B:68 87.0 0.435 E -122.3 137.4 NA NA NA
3dz8 1 P20337 86.13 1e-113 X-RAY
 2008-08-12 LYS A:70 A:69 86.0 NA T -89.9 -9.6 86.0 NA NA UNX
UNX
HOH
 5.711
5.897
3.779
 CD
N
CD
 UNK
UNK
O
2gf9 1 O95716 88.82 2e-113 X-RAY
 2006-05-02 LYS A:69 A:69 23.0 NA E -135.6 154.7 23.0 NA NA UNX
HOH
 5.229
4.534
 CG
N
 UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20336-f1 1 P20336 100.0 4e-168 LYS A:69 A:69 79.0 0.395 E -110.7 134.5
af-q96e17-f1 1 Q96E17 84.09 9e-142 LYS A:77 A:77 82.0 0.41 E -103.5 134.6