Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 34890858 . A C CCDS54246.1:NM_001184722.1:c.1627Agt>Cgt_NP_001171651.1:p.543S>R Homo sapiens glucose-6-phosphate isomerase (GPI), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1iri 1 P06744 94.98 0.0 X-RAY
 2002-06-05 SER A:532 A:532 105.0 0.913 S -92.4 -12.6 105.0 0.913 0.0 HOH
 9.918
 N
 O
SER B:532 B:532 92.0 0.8 S -111.9 16.3 92.0 0.8 0.0 HOH
 3.249
 N
 O
SER C:532 C:532 114.0 0.991 S -100.1 2.2 NA NA NA
SER D:532 D:532 100.0 0.87 S -88.4 -1.0 NA NA NA
1jiq 1 P06744 94.98 0.0 X-RAY
 2002-06-19 SER A:532 A:532 108.0 0.939 S -89.2 -11.5 108.0 0.939 0.0 HOH
 5.422
 O
 O
SER B:532 B:532 99.0 0.861 S -95.9 1.1 99.0 0.861 0.0 HOH
 2.689
 O
 O
SER C:532 C:532 111.0 0.965 S -76.8 -22.9 NA NA NA
SER D:532 D:532 100.0 0.87 S -81.0 -8.5 NA NA NA
1nuh 1 P06744 94.98 0.0 X-RAY
 2003-02-11 SER A:532 A:531 100.0 0.87 S -116.9 -4.9 100.0 0.87 0.0
1jlh 1 P06744 94.8 0.0 X-RAY
 2003-02-11 SER A:532 A:531 97.0 0.843 S -108.0 4.6 97.0 0.843 0.0 HOH
 2.567
 N
 O
SER B:532 B:531 110.0 0.957 S -92.3 -1.7 110.0 0.957 0.0 HOH
 2.639
 O
 O
SER C:532 C:531 101.0 0.878 S -88.5 -1.0 NA NA NA
SER D:532 D:531 89.0 0.774 S -98.7 9.5 NA NA NA
1iat 1 P06744 94.97 0.0 X-RAY
 2001-05-30 SER A:531 A:531 115.0 1.0 S -93.2 -7.6 115.0 1.0 0.0 HOH
 3.779
 O
 O
6xuh 1 P06744 94.96 0.0 X-RAY
 2020-07-29 SER A:531 A:531 103.0 0.896 S -119.9 -0.1 103.0 0.896 0.0 HOH
 4.908
 N
 O
SER B:531 B:531 91.0 0.791 S -120.4 -0.3 91.0 0.791 0.0 HOH
 5.949
 N
 O
SER C:531 C:531 105.0 0.913 S -120.7 -0.5 NA NA NA
SER D:531 D:531 109.0 0.948 S -120.6 -0.4 NA NA NA
6xui 1 P06744 94.96 0.0 X-RAY
 2020-07-29 SER A:531 A:531 108.0 0.939 S -92.9 -18.6 108.0 0.939 0.0 HOH
 3.160
 O
 O
SER B:531 B:531 110.0 0.957 S -92.6 -11.7 NA NA NA
SER C:531 C:531 111.0 0.965 S -94.4 -14.1 NA NA NA
SER D:531 D:531 100.0 0.87 S -108.7 16.5 100.0 0.87 0.0 HOH
 3.317
 O
 O
1gzd 1 P08059 88.51 0.0 X-RAY
 2002-06-10 SER A:531 A:531 96.0 0.835 S -95.4 4.0 96.0 0.835 0.0
1gzv 1 P08059 88.51 0.0 X-RAY
 2002-10-31 SER A:531 A:531 92.0 0.8 S -102.7 4.0 92.0 0.8 0.0
1g98 1 Q9N1E2 87.81 0.0 X-RAY
 2001-06-01 SER A:532 A:531 109.0 0.948 S -100.5 -3.2 109.0 0.948 0.0 HOH
 3.463
 N
 O
SER B:532 B:531 93.0 0.809 S -105.2 -6.8 93.0 0.809 0.0 HOH
 3.134
 O
 O
1hm5 1 Q9N1E2 87.81 0.0 X-RAY
 2002-09-27 SER A:532 A:531 107.0 0.93 S -104.8 6.2 107.0 0.93 0.0 HOH
 3.113
 O
 O
SER B:532 B:531 105.0 0.913 S -100.8 -2.4 105.0 0.913 0.0 HOH
 3.587
 N
 O
1hox 1 Q9N1E2 87.81 0.0 X-RAY
 2001-07-20 SER A:532 A:531 106.0 0.922 S -98.6 -5.9 106.0 0.922 0.0 HOH
 4.239
 CA
 O
SER B:532 B:531 93.0 0.809 S -97.8 5.7 93.0 0.809 0.0 HOH
 3.509
 O
 O
1xtb 1 Q9N1E2 87.81 0.0 X-RAY
 2005-03-22 SER A:532 A:531 108.0 0.939 S -105.7 0.3 108.0 0.939 0.0 HOH
 9.467
 O
 O
SER B:532 B:1531 108.0 0.939 S -101.2 -16.9 108.0 0.939 0.0 HOH
 7.618
 O
 O
1n8t 1 Q9N1E2 87.97 0.0 X-RAY
 2003-03-04 SER A:531 A:531 86.0 0.748 S -108.9 -0.7 86.0 0.748 0.0 HOH
 9.550
 N
 O
SER B:531 B:531 103.0 0.896 S -96.7 -27.1 103.0 0.896 0.0 HOH
 3.983
 N
 O
1dqr 1 Q9N1E2 87.79 0.0 X-RAY
 2000-02-09 SER A:531 A:531 100.0 0.87 S -117.5 8.6 100.0 0.87 0.0 HOH
 4.680
 CB
 O
SER B:531 B:531 104.0 0.904 S -117.6 7.4 104.0 0.904 0.0 HOH
 3.910
 OG
 O
1koj 1 Q9N1E2 87.79 0.0 X-RAY
 2002-05-03 SER A:531 A:531 108.0 0.939 S -117.7 1.3 108.0 0.939 0.0 HOH
 3.556
 CB
 O
SER B:531 B:531 89.0 0.774 S -103.1 -0.2 89.0 0.774 0.0 HOH
 2.700
 O
 O
2cvp 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 118.0 1.0 S -99.7 -2.5 118.0 1.0 0.0 GOL
HOH
 8.639
7.396
 N
O
 O2
O
SER B:532 B:532 119.0 1.0 S -95.4 -15.6 119.0 1.0 0.0 GOL
HOH
 9.016
3.507
 N
N
 O2
O
2cxn 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 119.0 1.0 S -96.2 -5.9 119.0 1.0 0.0 GOL
HOH
 8.920
3.552
 N
N
 O2
O
SER B:532 B:532 117.0 1.0 S -93.1 -6.7 117.0 1.0 0.0 GOL
HOH
 8.854
3.449
 N
CA
 O2
O
2cxo 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 113.0 0.983 S -92.8 -6.2 113.0 0.983 0.0 GOL
HOH
 9.037
2.698
 N
OG
 O2
O
SER B:532 B:532 120.0 1.0 S -94.1 -7.2 120.0 1.0 0.0 GOL
HOH
 8.716
3.515
 N
N
 O2
O
2cxp 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 119.0 1.0 S -99.0 -6.2 119.0 1.0 0.0 GOL
HOH
 8.867
4.255
 N
O
 O2
O
SER B:532 B:532 117.0 1.0 S -96.3 -2.2 117.0 1.0 0.0 GOL
HOH
 8.789
2.888
 N
O
 O2
O
2cxq 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 116.0 1.0 S -101.3 -9.1 116.0 1.0 0.0 GOL
HOH
 8.993
2.892
 N
OG
 O2
O
SER B:532 B:532 121.0 1.0 S -91.9 -9.4 121.0 1.0 0.0 GOL
HOH
 8.815
3.393
 N
CA
 O2
O
2cxr 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 119.0 1.0 S -91.6 -4.0 119.0 1.0 0.0 GOL
HOH
 8.838
4.110
 N
O
 O2
O
SER B:532 B:532 121.0 1.0 S -91.9 -12.1 121.0 1.0 0.0 GOL
HOH
 8.688
3.511
 N
N
 O2
O
2cxs 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 121.0 1.0 S -97.8 -11.5 121.0 1.0 0.0 GOL
HOH
 8.969
3.371
 N
N
 O2
O
SER B:532 B:532 118.0 1.0 S -94.3 -6.0 118.0 1.0 0.0 GOL
HOH
 8.838
3.566
 N
N
 O2
O
2cxt 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 117.0 1.0 S -100.4 -1.9 117.0 1.0 0.0 GOL
HOH
 8.904
2.624
 N
OG
 O2
O
SER B:532 B:532 120.0 1.0 S -94.3 -1.4 120.0 1.0 0.0 GOL
HOH
 8.813
3.599
 N
N
 O2
O
2cxu 1 P06745 84.38 0.0 X-RAY
 2006-05-23 SER A:532 A:532 118.0 1.0 S -98.9 -6.2 118.0 1.0 0.0 GOL
HOH
 8.808
3.318
 N
N
 O2
O
SER B:532 B:532 118.0 1.0 S -96.0 -1.6 118.0 1.0 0.0 GOL
HOH
 8.932
3.608
 N
N
 O2
O
1u0e 1 P06745 84.05 0.0 X-RAY
 2004-11-02 SER A:532 A:531 117.0 1.0 S -99.7 -4.7 117.0 1.0 0.0 HOH
 5.201
 C
 O
SER B:532 B:531 117.0 1.0 S -92.1 -11.4 117.0 1.0 0.0 SO4
BME
HOH
 3.509
9.557
2.490
 N
N
O
 O2
O1
O
1u0f 1 P06745 84.05 0.0 X-RAY
 2004-11-02 SER A:532 A:531 114.0 0.991 S -105.3 2.5 114.0 0.991 0.0 GOL
HOH
 9.525
5.522
 N
O
 O3
O
SER B:532 B:531 121.0 1.0 S -91.9 -15.7 121.0 1.0 0.0 BME
GOL
HOH
 9.633
3.254
2.759
 N
N
O
 O1
C1
O
1u0g 1 P06745 84.05 0.0 X-RAY
 2004-11-02 SER A:532 A:531 109.0 0.948 S -95.4 5.2 109.0 0.948 0.0 HOH
 4.342
 O
 O
SER B:532 B:531 116.0 1.0 S -94.6 -14.9 116.0 1.0 0.0 BME
HOH
 9.534
3.891
 N
O
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06744-f1 1 P06744 94.98 0.0 SER A:532 A:532 107.0 0.93 S -101.1 -5.7