Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 34890879 | . | G | A | CCDS54246.1:NM_001184722.1:c.1648Gac>Aac_NP_001171651.1:p.550D>N | Homo sapiens glucose-6-phosphate isomerase (GPI), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1iri | 1 | P06744 | 94.98 | 0.0 |
X-RAY |
2002-06-05 | ASP | A:539 | A:539 | 93.0 | 0.62 | -64.8 | 158.0 | 23.0 | 0.153 | 0.467 |
B:P06744:0.467 |
HOH |
2.563 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 90.0 | 0.6 | -65.8 | 161.8 | 23.0 | 0.153 | 0.447 |
A:P06744:0.447 |
HOH |
5.061 |
OD2 |
O |
|||||||||
| ASP | C:539 | C:539 | 96.0 | 0.64 | -54.2 | 162.4 | NA | NA | NA | ||||||||||||||
| ASP | D:539 | D:539 | 95.0 | 0.633 | -65.1 | 155.7 | NA | NA | NA | ||||||||||||||
| 1jiq | 1 | P06744 | 94.98 | 0.0 |
X-RAY |
2002-06-19 | ASP | A:539 | A:539 | 90.0 | 0.6 | -63.0 | 162.1 | 20.0 | 0.133 | 0.467 |
B:P06744:0.467 |
HOH |
2.781 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 90.0 | 0.6 | -58.4 | 162.7 | 21.0 | 0.14 | 0.46 |
A:P06744:0.46 |
HOH |
2.769 |
OD2 |
O |
|||||||||
| ASP | C:539 | C:539 | 89.0 | 0.593 | -61.0 | 163.7 | NA | NA | NA | ||||||||||||||
| ASP | D:539 | D:539 | 90.0 | 0.6 | -59.8 | 161.9 | NA | NA | NA | ||||||||||||||
| 1nuh | 1 | P06744 | 94.98 | 0.0 |
X-RAY |
2003-02-11 | ASP | A:539 | A:538 | 86.0 | 0.573 | -70.8 | 165.1 | 25.0 | 0.167 | 0.406 |
A:P06744:0.407 |
HOH |
7.197 |
OD2 |
O |
||
| 1jlh | 1 | P06744 | 94.8 | 0.0 |
X-RAY |
2003-02-11 | ASP | A:539 | A:538 | 91.0 | 0.607 | -66.8 | 163.6 | 24.0 | 0.16 | 0.447 |
B:P06744:0.447 |
HOH |
2.620 |
OD2 |
O |
||
| ASP | B:539 | B:538 | 91.0 | 0.607 | -62.4 | 164.4 | 23.0 | 0.153 | 0.454 |
A:P06744:0.453 |
HOH |
2.763 |
OD2 |
O |
|||||||||
| ASP | C:539 | C:538 | 95.0 | 0.633 | -63.3 | 165.1 | NA | NA | NA | ||||||||||||||
| ASP | D:539 | D:538 | 92.0 | 0.613 | -65.8 | 168.1 | NA | NA | NA | ||||||||||||||
| 1iat | 1 | P06744 | 94.97 | 0.0 |
X-RAY |
2001-05-30 | ASP | A:538 | A:538 | 90.0 | 0.6 | -62.8 | 162.5 | 33.0 | 0.22 | 0.38 |
A:P06744:0.38 |
HOH |
2.701 |
OD2 |
O |
||
| 6xuh | 1 | P06744 | 94.96 | 0.0 |
X-RAY |
2020-07-29 | ASP | A:538 | A:538 | 96.0 | 0.64 | -74.6 | 168.6 | 31.0 | 0.207 | 0.433 |
B:P06744:0.433 |
HOH |
7.161 |
C |
O |
||
| ASP | B:538 | B:538 | 90.0 | 0.6 | -73.0 | 168.3 | 24.0 | 0.16 | 0.44 |
A:P06744:0.44 |
HOH |
5.979 |
N |
O |
|||||||||
| ASP | C:538 | C:538 | 91.0 | 0.607 | -73.5 | 168.2 | NA | NA | NA | ||||||||||||||
| ASP | D:538 | D:538 | 93.0 | 0.62 | -73.5 | 168.2 | NA | NA | NA | ||||||||||||||
| 6xui | 1 | P06744 | 94.96 | 0.0 |
X-RAY |
2020-07-29 | ASP | A:538 | A:538 | 94.0 | 0.627 | -53.4 | 164.7 | 26.0 | 0.173 | 0.454 |
D:P06744:0.453 |
HOH |
2.482 |
OD1 |
O |
||
| ASP | B:538 | B:538 | 89.0 | 0.593 | -60.2 | 165.3 | NA | NA | NA | ||||||||||||||
| ASP | C:538 | C:538 | 89.0 | 0.593 | -58.8 | 160.6 | NA | NA | NA | ||||||||||||||
| ASP | D:538 | D:538 | 88.0 | 0.587 | -58.9 | 162.2 | 22.0 | 0.147 | 0.44 |
A:P06744:0.44 |
HOH |
2.503 |
OD2 |
O |
|||||||||
| 1gzd | 1 | P08059 | 88.51 | 0.0 |
X-RAY |
2002-06-10 | ASP | A:538 | A:538 | 94.0 | 0.627 | -61.0 | 159.8 | 31.0 | 0.207 | 0.42 |
A:P08059:0.42 |
HOH |
3.716 |
CA |
O |
||
| 1gzv | 1 | P08059 | 88.51 | 0.0 |
X-RAY |
2002-10-31 | ASP | A:538 | A:538 | 94.0 | 0.627 | -64.8 | 158.5 | 29.0 | 0.193 | 0.434 |
A:P08059:0.433 |
||||||
| 1g98 | 1 | Q9N1E2 | 87.81 | 0.0 |
X-RAY |
2001-06-01 | ASP | A:539 | A:538 | 93.0 | 0.62 | -66.0 | 162.8 | 18.0 | 0.12 | 0.5 |
B:Q9N1E2:0.5 |
HOH |
2.712 |
OD2 |
O |
||
| ASP | B:539 | B:538 | 89.0 | 0.593 | -68.0 | 164.2 | 22.0 | 0.147 | 0.446 |
A:Q9N1E2:0.447 |
HOH |
2.599 |
OD2 |
O |
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| 1hm5 | 1 | Q9N1E2 | 87.81 | 0.0 |
X-RAY |
2002-09-27 | ASP | A:539 | A:538 | 89.0 | 0.593 | -70.8 | 160.6 | 26.0 | 0.173 | 0.42 |
B:Q9N1E2:0.42 |
HOH |
2.607 |
OD2 |
O |
||
| ASP | B:539 | B:538 | 91.0 | 0.607 | -69.8 | 159.6 | 26.0 | 0.173 | 0.434 |
A:Q9N1E2:0.433 |
HOH |
2.736 |
OD2 |
O |
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| 1hox | 1 | Q9N1E2 | 87.81 | 0.0 |
X-RAY |
2001-07-20 | ASP | A:539 | A:538 | 89.0 | 0.593 | -63.1 | 159.8 | 19.0 | 0.127 | 0.466 |
B:Q9N1E2:0.467 |
HOH |
2.846 |
OD2 |
O |
||
| ASP | B:539 | B:538 | 89.0 | 0.593 | -71.9 | 165.7 | 24.0 | 0.16 | 0.433 |
A:Q9N1E2:0.433 |
HOH |
2.601 |
OD2 |
O |
|||||||||
| 1xtb | 1 | Q9N1E2 | 87.81 | 0.0 |
X-RAY |
2005-03-22 | ASP | A:539 | A:538 | 92.0 | 0.613 | -66.1 | 160.5 | 26.0 | 0.173 | 0.44 |
B:Q9N1E2:0.44 |
HOH |
2.748 |
OD2 |
O |
||
| ASP | B:539 | B:1538 | 90.0 | 0.6 | -68.3 | 162.2 | 24.0 | 0.16 | 0.44 |
A:Q9N1E2:0.44 |
HOH |
2.818 |
OD2 |
O |
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| 1n8t | 1 | Q9N1E2 | 87.97 | 0.0 |
X-RAY |
2003-03-04 | ASP | A:538 | A:538 | 95.0 | 0.633 | -55.3 | 160.9 | 28.0 | 0.187 | 0.446 |
B:Q9N1E2:0.447 |
HOH |
2.665 |
OD2 |
O |
||
| ASP | B:538 | B:538 | 90.0 | 0.6 | -71.0 | 157.8 | 25.0 | 0.167 | 0.433 |
A:Q9N1E2:0.433 |
HOH |
2.379 |
OD2 |
O |
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| 1dqr | 1 | Q9N1E2 | 87.79 | 0.0 |
X-RAY |
2000-02-09 | ASP | A:538 | A:538 | 90.0 | 0.6 | -68.4 | 156.5 | 31.0 | 0.207 | 0.393 |
B:Q9N1E2:0.393 |
HOH |
3.353 |
CA |
O |
||
| ASP | B:538 | B:538 | 87.0 | 0.58 | -68.2 | 157.0 | 29.0 | 0.193 | 0.387 |
A:Q9N1E2:0.387 |
HOH |
5.800 |
O |
O |
|||||||||
| 1koj | 1 | Q9N1E2 | 87.79 | 0.0 |
X-RAY |
2002-05-03 | ASP | A:538 | A:538 | 94.0 | 0.627 | -66.6 | 160.7 | 15.0 | 0.1 | 0.527 |
B:Q9N1E2:0.527 |
HOH |
2.711 |
OD2 |
O |
||
| ASP | B:538 | B:538 | 95.0 | 0.633 | -65.5 | 162.7 | 24.0 | 0.16 | 0.473 |
A:Q9N1E2:0.473 |
HOH |
2.588 |
OD2 |
O |
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| 2cvp | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 94.0 | 0.627 | -61.4 | 160.4 | 28.0 | 0.187 | 0.44 |
B:P06745:0.44 |
HOH |
2.661 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 92.0 | 0.613 | -63.2 | 164.1 | 24.0 | 0.16 | 0.453 |
A:P06745:0.453 |
HOH |
2.761 |
OD2 |
O |
|||||||||
| 2cxn | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 92.0 | 0.613 | -61.2 | 160.7 | 27.0 | 0.18 | 0.433 |
B:P06745:0.433 |
HOH |
2.690 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 92.0 | 0.613 | -62.1 | 162.3 | 25.0 | 0.167 | 0.446 |
A:P06745:0.447 |
HOH |
2.678 |
OD2 |
O |
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| 2cxo | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 92.0 | 0.613 | -59.0 | 158.5 | 27.0 | 0.18 | 0.433 |
B:P06745:0.433 |
HOH |
2.670 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 92.0 | 0.613 | -61.2 | 166.1 | 22.0 | 0.147 | 0.466 |
A:P06745:0.467 |
HOH |
2.741 |
OD2 |
O |
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| 2cxp | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 91.0 | 0.607 | -60.7 | 160.2 | 26.0 | 0.173 | 0.434 |
B:P06745:0.433 |
HOH |
2.630 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 93.0 | 0.62 | -60.9 | 162.2 | 25.0 | 0.167 | 0.453 |
A:P06745:0.453 |
HOH |
2.731 |
OD2 |
O |
|||||||||
| 2cxq | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 93.0 | 0.62 | -61.7 | 159.3 | 27.0 | 0.18 | 0.44 |
B:P06745:0.44 |
HOH |
2.638 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 92.0 | 0.613 | -61.8 | 162.8 | 24.0 | 0.16 | 0.453 |
A:P06745:0.453 |
HOH |
2.724 |
OD2 |
O |
|||||||||
| 2cxr | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 92.0 | 0.613 | -61.6 | 161.4 | 28.0 | 0.187 | 0.426 |
B:P06745:0.427 |
HOH |
2.613 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 90.0 | 0.6 | -63.3 | 163.7 | 22.0 | 0.147 | 0.453 |
A:P06745:0.453 |
HOH |
2.720 |
OD2 |
O |
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| 2cxs | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 91.0 | 0.607 | -61.4 | 160.1 | 27.0 | 0.18 | 0.427 |
B:P06745:0.427 |
HOH |
2.656 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 92.0 | 0.613 | -61.3 | 162.4 | 26.0 | 0.173 | 0.44 |
A:P06745:0.44 |
HOH |
2.708 |
OD2 |
O |
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| 2cxt | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 90.0 | 0.6 | -61.4 | 159.4 | 27.0 | 0.18 | 0.42 |
B:P06745:0.42 |
HOH |
2.696 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 92.0 | 0.613 | -61.0 | 162.1 | 24.0 | 0.16 | 0.453 |
A:P06745:0.453 |
HOH |
2.898 |
OD2 |
O |
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| 2cxu | 1 | P06745 | 84.38 | 0.0 |
X-RAY |
2006-05-23 | ASP | A:539 | A:539 | 92.0 | 0.613 | -60.7 | 162.1 | 27.0 | 0.18 | 0.433 |
B:P06745:0.433 |
HOH |
2.714 |
OD2 |
O |
||
| ASP | B:539 | B:539 | 91.0 | 0.607 | -59.0 | 162.7 | 26.0 | 0.173 | 0.434 |
A:P06745:0.433 |
HOH |
2.669 |
OD2 |
O |
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| 1u0e | 1 | P06745 | 84.05 | 0.0 |
X-RAY |
2004-11-02 | ASP | A:539 | A:538 | 90.0 | 0.6 | -62.7 | 161.9 | 29.0 | 0.193 | 0.407 |
B:P06745:0.407 |
HOH |
2.806 |
OD2 |
O |
||
| ASP | B:539 | B:538 | 91.0 | 0.607 | -60.7 | 163.4 | 24.0 | 0.16 | 0.447 |
A:P06745:0.447 |
HOH |
2.751 |
OD2 |
O |
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| 1u0f | 1 | P06745 | 84.05 | 0.0 |
X-RAY |
2004-11-02 | ASP | A:539 | A:538 | 90.0 | 0.6 | -59.8 | 163.3 | 25.0 | 0.167 | 0.433 |
B:P06745:0.433 |
HOH |
2.568 |
OD2 |
O |
||
| ASP | B:539 | B:538 | 90.0 | 0.6 | -64.0 | 163.9 | 25.0 | 0.167 | 0.433 |
A:P06745:0.433 |
HOH |
2.753 |
OD2 |
O |
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| 1u0g | 1 | P06745 | 84.05 | 0.0 |
X-RAY |
2004-11-02 | ASP | A:539 | A:538 | 91.0 | 0.607 | -60.1 | 158.9 | 26.0 | 0.173 | 0.434 |
B:P06745:0.433 |
HOH |
2.554 |
OD2 |
O |
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| ASP | B:539 | B:538 | 89.0 | 0.593 | -65.5 | 162.8 | 23.0 | 0.153 | 0.44 |
A:P06745:0.44 |
HOH |
2.690 |
OD2 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06744-f1 | 1 | P06744 | 94.98 | 0.0 | ASP | A:539 | A:539 | 91.0 | 0.607 | -61.9 | 161.3 | ||