Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 34890912 . A C CCDS54246.1:NM_001184722.1:c.1681Aag>Cag_NP_001171651.1:p.561K>Q Homo sapiens glucose-6-phosphate isomerase (GPI), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1iri 1 P06744 94.98 0.0 X-RAY
 2002-06-05 LYS A:550 A:550 11.0 0.055 H -54.7 -47.4 11.0 0.055 0.0 HOH
 7.335
 CA
 O
LYS B:550 B:550 12.0 0.06 H -73.9 -40.5 12.0 0.06 0.0 HOH
 2.788
 NZ
 O
LYS C:550 C:550 16.0 0.08 H -58.7 -41.9 NA NA NA
LYS D:550 D:550 12.0 0.06 H -63.9 -44.5 NA NA NA
1jiq 1 P06744 94.98 0.0 X-RAY
 2002-06-19 LYS A:550 A:550 14.0 0.07 H -60.9 -38.8 14.0 0.07 0.0 HOH
 4.180
 CB
 O
LYS B:550 B:550 10.0 0.05 H -67.0 -39.2 10.0 0.05 0.0 HOH
 3.374
 NZ
 O
LYS C:550 C:550 15.0 0.075 H -62.9 -38.2 NA NA NA
LYS D:550 D:550 13.0 0.065 H -64.3 -39.7 NA NA NA
1nuh 1 P06744 94.98 0.0 X-RAY
 2003-02-11 LYS A:550 A:549 12.0 0.06 H -60.9 -45.3 12.0 0.06 0.0
1jlh 1 P06744 94.8 0.0 X-RAY
 2003-02-11 LYS A:550 A:549 10.0 0.05 H -67.7 -32.5 10.0 0.05 0.0 HOH
 3.099
 NZ
 O
LYS B:550 B:549 15.0 0.075 H -61.7 -35.5 15.0 0.075 0.0 HOH
 3.005
 NZ
 O
LYS C:550 C:549 10.0 0.05 H -65.8 -37.3 NA NA NA
LYS D:550 D:549 8.0 0.04 H -64.7 -39.2 NA NA NA
1iat 1 P06744 94.97 0.0 X-RAY
 2001-05-30 LYS A:549 A:549 25.0 0.125 H -64.6 -38.5 25.0 0.125 0.0 HOH
 2.662
 O
 O
6xuh 1 P06744 94.96 0.0 X-RAY
 2020-07-29 LYS A:549 A:549 18.0 0.09 H -60.3 -36.3 18.0 0.09 0.0 HOH
 3.288
 CG
 O
LYS B:549 B:549 20.0 0.1 H -60.0 -36.1 20.0 0.1 0.0 HOH
 3.072
 NZ
 O
LYS C:549 C:549 20.0 0.1 H -60.2 -36.1 NA NA NA
LYS D:549 D:549 21.0 0.105 H -60.1 -36.1 NA NA NA
6xui 1 P06744 94.96 0.0 X-RAY
 2020-07-29 LYS A:549 A:549 21.0 0.105 H -65.5 -37.0 21.0 0.105 0.0 HOH
 3.652
 CB
 O
LYS B:549 B:549 21.0 0.105 H -66.9 -41.2 NA NA NA
LYS C:549 C:549 23.0 0.115 H -63.3 -41.4 NA NA NA
LYS D:549 D:549 20.0 0.1 H -65.7 -39.8 20.0 0.1 0.0 HOH
 3.292
 CB
 O
1gzd 1 P08059 88.51 0.0 X-RAY
 2002-06-10 LYS A:549 A:549 10.0 0.05 H -58.2 -38.9 10.0 0.05 0.0 HOH
 8.101
 NZ
 O
1gzv 1 P08059 88.51 0.0 X-RAY
 2002-10-31 LYS A:549 A:549 10.0 0.05 H -63.2 -49.7 10.0 0.05 0.0
1g98 1 Q9N1E2 87.81 0.0 X-RAY
 2001-06-01 LYS A:550 A:549 21.0 0.105 H -61.3 -39.4 21.0 0.105 0.0 HOH
 3.154
 NZ
 O
LYS B:550 B:549 14.0 0.07 H -65.0 -40.0 14.0 0.07 0.0 HOH
 2.831
 O
 O
1hm5 1 Q9N1E2 87.81 0.0 X-RAY
 2002-09-27 LYS A:550 A:549 13.0 0.065 H -64.9 -39.9 13.0 0.065 0.0 HOH
 2.864
 O
 O
LYS B:550 B:549 14.0 0.07 H -62.1 -40.9 14.0 0.07 0.0 HOH
 3.185
 NZ
 O
1hox 1 Q9N1E2 87.81 0.0 X-RAY
 2001-07-20 LYS A:550 A:549 11.0 0.055 H -63.3 -39.5 11.0 0.055 0.0 HOH
 2.855
 O
 O
LYS B:550 B:549 11.0 0.055 H -65.6 -38.1 11.0 0.055 0.0 HOH
 2.911
 O
 O
1xtb 1 Q9N1E2 87.81 0.0 X-RAY
 2005-03-22 LYS A:550 A:549 21.0 0.105 H -63.9 -36.4 21.0 0.105 0.0 HOH
 6.706
 N
 O
LYS B:550 B:1549 21.0 0.105 H -65.8 -34.6 21.0 0.105 0.0 HOH
 6.605
 N
 O
1n8t 1 Q9N1E2 87.97 0.0 X-RAY
 2003-03-04 LYS A:549 A:549 11.0 0.055 H -60.4 -39.1 11.0 0.055 0.0 HOH
 6.822
 N
 O
LYS B:549 B:549 14.0 0.07 H -65.7 -41.9 14.0 0.07 0.0 HOH
 3.100
 NZ
 O
1dqr 1 Q9N1E2 87.79 0.0 X-RAY
 2000-02-09 LYS A:549 A:549 13.0 0.065 H -57.5 -41.9 13.0 0.065 0.0 HOH
 4.168
 O
 O
LYS B:549 B:549 20.0 0.1 H -58.6 -36.2 20.0 0.1 0.0 HOH
 7.297
 O
 O
1koj 1 Q9N1E2 87.79 0.0 X-RAY
 2002-05-03 LYS A:549 A:549 21.0 0.105 H -61.9 -40.8 21.0 0.105 0.0 HOH
 2.738
 O
 O
LYS B:549 B:549 11.0 0.055 H -63.0 -37.5 11.0 0.055 0.0 HOH
 3.927
 CB
 O
2cvp 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 20.0 0.1 H -65.2 -39.0 20.0 0.1 0.0 GOL
HOH
 5.978
5.334
 N
CD
 O3
O
LYS B:550 B:550 22.0 0.11 H -66.8 -37.3 22.0 0.11 0.0 GOL
HOH
 5.975
3.521
 N
CB
 O3
O
2cxn 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 22.0 0.11 H -65.8 -36.5 22.0 0.11 0.0 GOL
HOH
 6.013
3.013
 N
NZ
 O3
O
LYS B:550 B:550 25.0 0.125 H -66.6 -35.9 25.0 0.125 0.0 GOL
HOH
 6.008
3.192
 N
NZ
 O3
O
2cxo 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 23.0 0.115 H -66.5 -36.6 23.0 0.115 0.0 GOL
HOH
 6.023
2.891
 N
O
 O3
O
LYS B:550 B:550 24.0 0.12 H -64.9 -38.3 24.0 0.12 0.0 GOL
HOH
 6.084
3.717
 N
CB
 O3
O
2cxp 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 22.0 0.11 H -64.7 -39.5 22.0 0.11 0.0 GOL
HOH
 5.936
2.984
 N
NZ
 O3
O
LYS B:550 B:550 23.0 0.115 H -63.9 -39.4 23.0 0.115 0.0 GOL
HOH
 5.968
3.639
 N
CB
 O3
O
2cxq 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 21.0 0.105 H -66.5 -36.7 21.0 0.105 0.0 GOL
HOH
 6.100
2.836
 N
O
 O3
O
LYS B:550 B:550 25.0 0.125 H -65.3 -35.6 25.0 0.125 0.0 GOL
HOH
 6.023
3.882
 N
CB
 O3
O
2cxr 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 22.0 0.11 H -66.1 -38.4 22.0 0.11 0.0 GOL
HOH
 6.036
2.731
 N
O
 O3
O
LYS B:550 B:550 24.0 0.12 H -65.2 -37.1 24.0 0.12 0.0 GOL
HOH
 5.992
3.068
 N
NZ
 O3
O
2cxs 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 22.0 0.11 H -66.5 -36.2 22.0 0.11 0.0 GOL
HOH
 6.025
2.700
 N
O
 O3
O
LYS B:550 B:550 24.0 0.12 H -66.6 -34.9 24.0 0.12 0.0 GOL
HOH
 6.021
3.160
 N
NZ
 O3
O
2cxt 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 22.0 0.11 H -68.1 -34.6 22.0 0.11 0.0 GOL
HOH
 6.033
2.885
 N
O
 O3
O
LYS B:550 B:550 22.0 0.11 H -67.3 -35.7 22.0 0.11 0.0 GOL
HOH
 6.008
3.174
 N
NZ
 O3
O
2cxu 1 P06745 84.38 0.0 X-RAY
 2006-05-23 LYS A:550 A:550 22.0 0.11 H -65.8 -37.9 22.0 0.11 0.0 GOL
HOH
 5.987
3.134
 N
O
 O3
O
LYS B:550 B:550 21.0 0.105 H -64.5 -37.0 21.0 0.105 0.0 GOL
HOH
 5.984
3.185
 N
NZ
 O3
O
1u0e 1 P06745 84.05 0.0 X-RAY
 2004-11-02 LYS A:550 A:549 25.0 0.125 H -62.4 -41.8 25.0 0.125 0.0 HOH
 2.842
 NZ
 O
LYS B:550 B:549 22.0 0.11 H -64.5 -34.5 22.0 0.11 0.0 SO4
BME
BME
HOH
 4.470
6.198
8.787
3.015
 NZ
N
O
NZ
 O2
O1
C1
O
1u0f 1 P06745 84.05 0.0 X-RAY
 2004-11-02 LYS A:550 A:549 26.0 0.13 H -65.5 -38.0 26.0 0.13 0.0 GOL
HOH
 6.238
3.974
 N
CB
 O3
O
LYS B:550 B:549 22.0 0.11 H -66.8 -37.2 22.0 0.11 0.0 SO4
BME
GOL
HOH
 9.016
6.302
6.157
2.870
 O
N
NZ
NZ
 O1
O1
C3
O
1u0g 1 P06745 84.05 0.0 X-RAY
 2004-11-02 LYS A:550 A:549 19.0 0.095 H -65.2 -39.4 19.0 0.095 0.0 HOH
 3.865
 C
 O
LYS B:550 B:549 27.0 0.135 H -66.4 -38.2 27.0 0.135 0.0 BME
HOH
 6.239
3.506
 N
CD
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06744-f1 1 P06744 94.98 0.0 LYS A:550 A:550 22.0 0.11 H -59.5 -38.9