Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 34890924 . G A CCDS54246.1:NM_001184722.1:c.1693Gag>Aag_NP_001171651.1:p.565E>K Homo sapiens glucose-6-phosphate isomerase (GPI), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1iri 1 P06744 94.98 0.0 X-RAY
 2002-06-05 GLU A:554 A:554 141.0 0.742 T -93.0 -12.4 141.0 0.742 0.0 HOH
 8.379
 N
 O
GLU B:554 B:554 142.0 0.747 T -105.5 10.0 142.0 0.747 0.0 HOH
 6.696
 N
 O
GLU C:554 C:554 148.0 0.779 T -88.7 -13.7 NA NA NA
GLU D:554 D:554 137.0 0.721 S -82.0 -21.4 NA NA NA
1jiq 1 P06744 94.98 0.0 X-RAY
 2002-06-19 GLU A:554 A:554 147.0 0.774 T -91.0 3.9 147.0 0.774 0.0 HOH
 4.638
 N
 O
GLU B:554 B:554 142.0 0.747 T -100.6 4.4 142.0 0.747 0.0 HOH
 4.268
 O
 O
GLU C:554 C:554 142.0 0.747 T -89.0 -2.4 NA NA NA
GLU D:554 D:554 139.0 0.732 T -86.3 -19.0 NA NA NA
1nuh 1 P06744 94.98 0.0 X-RAY
 2003-02-11 GLU A:554 A:553 143.0 0.753 S -70.3 -31.0 143.0 0.753 0.0
1jlh 1 P06744 94.8 0.0 X-RAY
 2003-02-11 GLU A:554 A:553 111.0 0.584 T -86.5 -33.1 111.0 0.584 0.0 HOH
 3.227
 OE2
 O
GLU B:554 B:553 144.0 0.758 T -96.4 -10.8 144.0 0.758 0.0 HOH
 3.363
 O
 O
GLU C:554 C:553 124.0 0.653 T -89.4 -37.3 NA NA NA
GLU D:554 D:553 112.0 0.589 T -84.4 -44.5 NA NA NA
1iat 1 P06744 94.97 0.0 X-RAY
 2001-05-30 GLU A:553 A:553 149.0 0.784 T -87.2 -29.8 149.0 0.784 0.0 HOH
 3.956
 CG
 O
6xuh 1 P06744 94.96 0.0 X-RAY
 2020-07-29 GLU A:553 A:553 132.0 0.695 S -107.7 -1.2 131.0 0.689 0.006 B:P06744:0.005
 HOH
 3.135
 N
 O
GLU B:553 B:553 128.0 0.674 T -106.8 4.2 128.0 0.674 0.0 HOH
 6.233
 OE2
 O
GLU C:553 C:553 131.0 0.689 S -106.4 -2.6 NA NA NA
GLU D:553 D:553 140.0 0.737 T -106.4 -0.8 NA NA NA
6xui 1 P06744 94.96 0.0 X-RAY
 2020-07-29 GLU A:553 A:553 177.0 0.932 T -124.0 24.2 176.0 0.926 0.006 D:P06744:0.005
 HOH
 5.375
 N
 O
GLU B:553 B:553 174.0 0.916 T -111.8 22.7 NA NA NA
GLU C:553 C:553 161.0 0.847 T -114.1 20.1 NA NA NA
GLU D:553 D:553 168.0 0.884 T -130.1 32.0 167.0 0.879 0.005 A:P06744:0.005
 HOH
 5.269
 N
 O
1gzd 1 P08059 88.51 0.0 X-RAY
 2002-06-10 GLU A:553 A:553 117.0 0.616 H -82.5 -24.4 117.0 0.616 0.0 HOH
 7.969
 N
 O
1gzv 1 P08059 88.51 0.0 X-RAY
 2002-10-31 GLU A:553 A:553 117.0 0.616 H -87.2 -26.7 117.0 0.616 0.0
1g98 1 Q9N1E2 87.81 0.0 X-RAY
 2001-06-01 GLU A:554 A:553 184.0 0.968 T -110.1 -0.7 184.0 0.968 0.0 HOH
 2.737
 N
 O
GLU B:554 B:553 152.0 0.8 T -89.1 -26.8 152.0 0.8 0.0 HOH
 3.662
 OE1
 O
1hm5 1 Q9N1E2 87.81 0.0 X-RAY
 2002-09-27 GLU A:554 A:553 155.0 0.816 S -99.6 -27.4 155.0 0.816 0.0 HOH
 4.183
 O
 O
GLU B:554 B:553 149.0 0.784 T -114.7 26.8 148.0 0.779 0.005 A:Q9N1E2:0.005
 HOH
 2.839
 OE2
 O
1hox 1 Q9N1E2 87.81 0.0 X-RAY
 2001-07-20 GLU A:554 A:553 129.0 0.679 T -114.6 13.4 128.0 0.674 0.005 B:Q9N1E2:0.005
 HOH
 3.088
 OE2
 O
GLU B:554 B:553 155.0 0.816 T -80.2 -53.0 154.0 0.811 0.005 A:Q9N1E2:0.005
 HOH
 3.024
 CG
 O
1xtb 1 Q9N1E2 87.81 0.0 X-RAY
 2005-03-22 GLU A:554 A:553 178.0 0.937 T -120.9 28.0 177.0 0.932 0.005 B:Q9N1E2:0.005
 HOH
 3.614
 O
 O
GLU B:554 B:1553 166.0 0.874 S -89.3 -16.4 166.0 0.874 0.0 HOH
 4.591
 O
 O
1n8t 1 Q9N1E2 87.97 0.0 X-RAY
 2003-03-04 GLU A:553 A:553 126.0 0.663 T -120.6 39.9 126.0 0.663 0.0 HOH
 5.579
 N
 O
GLU B:553 B:553 126.0 0.663 S -82.1 -31.7 126.0 0.663 0.0 HOH
 5.020
 O
 O
1dqr 1 Q9N1E2 87.79 0.0 X-RAY
 2000-02-09 GLU A:553 A:553 164.0 0.863 T -95.1 -33.1 164.0 0.863 0.0 HOH
 3.094
 CB
 O
GLU B:553 B:553 175.0 0.921 T -119.0 18.1 175.0 0.921 0.0 HOH
 7.461
 OE1
 O
1koj 1 Q9N1E2 87.79 0.0 X-RAY
 2002-05-03 GLU A:553 A:553 170.0 0.895 T -117.6 19.9 167.0 0.879 0.016 B:Q9N1E2:0.016
 HOH
 2.534
 OE1
 O
GLU B:553 B:553 147.0 0.774 H -78.0 -45.4 147.0 0.774 0.0 HOH
 3.212
 OE2
 O
2cvp 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 135.0 0.9 T -101.5 -3.3 135.0 0.9 0.0 GOL
HOH
 7.330
4.325
 OD1
C
 O2
O
ASP B:554 B:554 131.0 0.873 T -108.2 1.0 131.0 0.873 0.0 GOL
HOH
 6.901
5.310
 OD1
N
 O2
O
2cxn 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 136.0 0.907 T -107.3 -0.3 136.0 0.907 0.0 GOL
HOH
 6.899
4.281
 OD1
CA
 O2
O
ASP B:554 B:554 132.0 0.88 T -102.9 -8.2 132.0 0.88 0.0 GOL
HOH
 6.867
4.410
 OD1
OD2
 O2
O
2cxo 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 136.0 0.907 T -99.7 -5.2 136.0 0.907 0.0 GOL
HOH
 6.647
3.032
 OD1
N
 O2
O
ASP B:554 B:554 138.0 0.92 T -105.6 -7.7 138.0 0.92 0.0 GOL
HOH
 7.502
4.136
 OD1
OD2
 O2
O
2cxp 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 138.0 0.92 T -107.1 -1.0 138.0 0.92 0.0 GOL
HOH
 7.154
2.916
 OD1
OD2
 O2
O
ASP B:554 B:554 128.0 0.853 T -106.2 -4.9 128.0 0.853 0.0 GOL
HOH
 6.802
3.538
 OD1
O
 O2
O
2cxq 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 137.0 0.913 T -100.6 -9.0 137.0 0.913 0.0 GOL
HOH
 7.027
2.966
 OD1
OD2
 O2
O
ASP B:554 B:554 137.0 0.913 T -103.8 -13.1 137.0 0.913 0.0 GOL
HOH
 6.871
3.718
 OD1
O
 O2
O
2cxr 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 142.0 0.947 T -100.7 -3.8 142.0 0.947 0.0 GOL
HOH
 6.773
2.971
 OD1
OD2
 O2
O
ASP B:554 B:554 129.0 0.86 T -108.6 -10.0 129.0 0.86 0.0 GOL
HOH
 7.006
4.158
 OD1
OD2
 O2
O
2cxs 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 138.0 0.92 T -102.1 -6.3 138.0 0.92 0.0 GOL
HOH
 7.222
2.696
 OD1
OD2
 O2
O
ASP B:554 B:554 131.0 0.873 T -104.6 -8.9 131.0 0.873 0.0 GOL
HOH
 6.942
4.037
 OD1
O
 O2
O
2cxt 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 135.0 0.9 T -102.5 -2.7 135.0 0.9 0.0 GOL
HOH
 7.324
3.008
 OD1
N
 O2
O
ASP B:554 B:554 131.0 0.873 T -101.4 -10.4 131.0 0.873 0.0 GOL
HOH
 6.933
5.484
 OD1
N
 O2
O
2cxu 1 P06745 84.38 0.0 X-RAY
 2006-05-23 ASP A:554 A:554 136.0 0.907 T -103.4 1.2 136.0 0.907 0.0 GOL
HOH
 7.052
4.232
 OD1
O
 O2
O
ASP B:554 B:554 129.0 0.86 T -101.5 -8.0 129.0 0.86 0.0 GOL
HOH
 7.180
4.779
 OD1
OD1
 O2
O
1u0e 1 P06745 84.05 0.0 X-RAY
 2004-11-02 ASP A:554 A:553 137.0 0.913 T -113.0 15.0 136.0 0.907 0.006 B:P06745:0.007
 HOH
 5.031
 N
 O
ASP B:554 B:553 135.0 0.9 T -100.1 -7.5 135.0 0.9 0.0 BME
BME
HOH
 8.011
7.539
5.205
 N
C
OD1
 O1
C2
O
1u0f 1 P06745 84.05 0.0 X-RAY
 2004-11-02 ASP A:554 A:553 116.0 0.773 T -120.6 14.2 115.0 0.767 0.006 B:P06745:0.007
 GOL
HOH
 7.918
5.220
 OD2
N
 O3
O
ASP B:554 B:553 130.0 0.867 S -86.3 -27.5 130.0 0.867 0.0 SO4
BME
HOH
 7.297
8.040
5.498
 C
N
N
 O1
O1
O
1u0g 1 P06745 84.05 0.0 X-RAY
 2004-11-02 ASP A:554 A:553 129.0 0.86 S -103.0 -21.2 129.0 0.86 0.0 HOH
 5.176
 N
 O
ASP B:554 B:553 150.0 1.0 T -114.4 7.2 150.0 1.0 0.0 BME
HOH
 7.854
4.298
 N
CA
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06744-f1 1 P06744 94.98 0.0 GLU A:554 A:554 147.0 0.774 T -97.6 -7.0