Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41285954 . G A CCDS33030.1:NM_016154.4:c.47aGt>aAt_NP_057238.3:p.16S>N Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 SER A:33 A:16 23.0 0.2 S -58.9 149.7 23.0 0.2 0.0 MG
GDP
HOH
 7.185
3.621
2.958
 O
O
N
 MG
O1B
O
SER B:33 B:16 23.0 0.2 S -58.9 148.9 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ASN A:18 A:18 46.0 0.287 -55.1 150.7 46.0 0.287 0.0 GDP
GOL
GOL
HOH
 3.934
5.470
9.449
2.782
 O
ND2
ND2
ND2
 O1B
C2
O1
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ASN A:18 A:18 30.0 0.188 S -61.4 157.6 30.0 0.188 0.0 GNP
MG
HOH
 3.838
7.382
2.804
 O
O
OD1
 O1B
MG
O
ASN B:18 B:18 32.0 0.2 S -59.5 157.9 NA NA NA
ASN C:18 C:18 32.0 0.2 S -57.4 155.6 NA NA NA
ASN D:18 D:18 36.0 0.225 S -60.6 157.9 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 ASN A:19 A:16 31.0 0.194 S -55.8 154.6 31.0 0.194 0.0 MG
SO4
GNP
HOH
 7.306
8.242
3.829
2.733
 O
ND2
O
OD1
 MG
O2
O1B
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 ASN A:16 A:16 38.0 0.237 S -53.1 149.5 38.0 0.237 0.0 MG
GTP
HOH
 7.074
3.854
2.800
 O
O
ND2
 MG
O1B
O
ASN C:16 C:16 26.0 0.163 S -55.8 153.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 SER A:16 A:16 18.0 0.157 -59.4 162.7
af-p20338-f1 1 P20338 87.32 1e-141 ASN A:21 A:21 23.0 0.144 -56.4 160.5