Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41285972 . C A CCDS33030.1:NM_016154.4:c.65tCa>tAa_NP_057238.3:p.22S>* Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 SER A:39 A:22 52.0 0.452 H -71.0 -32.0 52.0 0.452 0.0 MG
GDP
BME
HOH
 2.169
2.978
6.219
2.899
 OG
N
C
OG
 MG
O2B
S2
O
SER B:39 B:22 53.0 0.461 H -75.6 -38.4 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 SER A:24 A:24 60.0 0.522 H -65.3 -46.5 60.0 0.522 0.0 GDP
HOH
 2.982
2.974
 N
OG
 O2B
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 SER A:24 A:24 16.0 0.139 H -65.3 -39.5 16.0 0.139 0.0 GNP
MG
HOH
 2.945
2.055
2.778
 OG
OG
O
 O2B
MG
O
SER B:24 B:24 17.0 0.148 H -66.1 -37.8 NA NA NA
SER C:24 C:24 28.0 0.243 H -69.0 -35.7 NA NA NA
SER D:24 D:24 15.0 0.13 H -71.2 -41.4 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 SER A:25 A:22 12.0 0.104 H -64.6 -41.1 12.0 0.104 0.0 MG
GNP
HOH
 2.021
2.900
2.679
 OG
OG
O
 MG
O2B
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 SER A:22 A:22 11.0 0.096 H -68.7 -39.6 11.0 0.096 0.0 MG
GTP
HOH
 2.202
2.887
2.902
 OG
OG
OG
 MG
O2B
O
SER C:22 C:22 14.0 0.122 H -70.8 -41.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 SER A:22 A:22 11.0 0.096 H -65.3 -35.2
af-p20338-f1 1 P20338 87.32 1e-141 SER A:27 A:27 18.0 0.157 H -64.6 -37.8