Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41285977 . C A CCDS33030.1:NM_016154.4:c.70Ctc>Atc_NP_057238.3:p.24L>I Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 LEU A:41 A:24 1.0 0.006 H -62.2 -48.6 1.0 0.006 0.0 MG
GDP
BME
HOH
 8.184
5.166
6.267
5.874
 N
N
N
C
 MG
O1A
S2
O
LEU B:41 B:24 0.0 0.0 H -59.5 -48.1 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 LEU A:26 A:26 3.0 0.018 H -61.4 -43.4 3.0 0.018 0.0 GDP
HOH
 5.020
5.727
 N
N
 O1A
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 LEU A:26 A:26 3.0 0.018 H -66.1 -43.1 3.0 0.018 0.0 GNP
MG
HOH
 4.993
7.901
4.822
 N
N
N
 O1A
MG
O
LEU B:26 B:26 3.0 0.018 H -64.1 -46.1 NA NA NA
LEU C:26 C:26 3.0 0.018 H -61.5 -47.1 NA NA NA
LEU D:26 D:26 3.0 0.018 H -69.3 -43.2 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 LEU A:27 A:24 3.0 0.018 H -62.0 -44.9 3.0 0.018 0.0 MG
GNP
HOH
 7.952
5.089
4.650
 N
N
N
 MG
O1A
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 LEU A:24 A:24 2.0 0.012 H -61.8 -46.0 2.0 0.012 0.0 MG
GTP
HOH
 7.960
5.117
4.716
 N
N
N
 MG
O1A
O
LEU C:24 C:24 2.0 0.012 H -60.0 -45.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 LEU A:24 A:24 2.0 0.012 H -63.1 -44.3
af-p20338-f1 1 P20338 87.32 1e-141 LEU A:29 A:29 2.0 0.012 H -63.4 -45.6