Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41286003 . G A CCDS33030.1:NM_016154.4:c.96aaG>aaA_NP_057238.3:p.32K>K Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 LYS A:49 NA:NA DO NA DO DO DO NA NA NA
LYS B:49 NA:NA DO NA DO DO DO NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 LYS A:34 A:34 124.0 0.62 -141.4 159.1 124.0 0.62 0.0 GDP
HOH
 9.377
2.726
 O
NZ
 N7
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 LYS A:34 A:34 109.0 0.545 S -143.7 158.6 109.0 0.545 0.0 GNP
HOH
 9.216
2.782
 O
NZ
 N7
O
LYS B:34 B:34 111.0 0.555 S -128.6 152.4 NA NA NA
LYS C:34 C:34 110.0 0.55 S -147.2 167.1 NA NA NA
LYS D:34 D:34 124.0 0.62 S -146.4 162.2 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 LYS A:35 A:32 140.0 0.7 S -134.8 151.8 140.0 0.7 0.0 GNP
HOH
 9.273
2.881
 O
O
 N7
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 LYS A:32 A:32 50.0 NA S -146.3 149.7 50.0 NA NA GTP
HOH
 9.129
2.881
 O
O
 N7
O
LYS C:32 C:32 45.0 NA S -145.9 146.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 LYS A:32 A:32 139.0 0.695 S -143.2 138.1
af-p20338-f1 1 P20338 87.32 1e-141 LYS A:37 A:37 137.0 0.685 S -135.5 143.1