Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41286305 . A C CCDS33030.1:NM_016154.4:c.113aAc>aCc_NP_057238.3:p.38N>T Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 ASN A:55 NA:NA DO NA DO DO DO NA NA NA
ASN B:55 NA:NA DO NA DO DO DO NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ASN A:40 NA:NA DO NA DO DO DO NA NA NA
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ASN A:40 A:40 140.0 0.875 -114.3 172.8 140.0 0.875 0.0 GNP
MG
HOH
 3.998
4.472
2.693
 O
O
O
 O2A
MG
O
ASN B:40 B:40 135.0 0.844 -113.2 174.0 NA NA NA
ASN C:40 C:40 141.0 0.881 -112.3 167.5 NA NA NA
ASN D:40 D:40 138.0 0.863 -114.5 165.3 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 ASN A:41 A:38 117.0 0.731 -106.9 164.6 117.0 0.731 0.0 MG
GNP
HOH
 4.571
3.963
2.694
 O
O
O
 MG
O2A
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 ASN A:38 A:38 76.0 NA -149.3 153.6 76.0 NA NA MG
GTP
HOH
 4.940
4.055
2.734
 O
O
O
 MG
O2A
O
ASN C:38 C:38 129.0 0.806 -90.1 151.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 ASN A:38 A:38 154.0 0.963 -68.2 156.1
af-p20338-f1 1 P20338 87.32 1e-141 ASN A:43 A:43 138.0 0.863 S -75.0 130.7