Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41286319 . G A CCDS33030.1:NM_016154.4:c.127Gtg>Atg_NP_057238.3:p.43V>M Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 VAL A:60 A:43 107.0 0.69 360.0 120.5 107.0 0.69 0.0 MG
GDP
BME
HOH
 6.979
8.153
9.902
3.473
 O
CG1
CG1
C
 MG
O1A
S2
O
VAL B:60 B:43 143.0 0.923 360.0 148.2 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 VAL A:45 NA:NA DO NA DO DO DO NA NA NA
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 VAL A:45 A:45 46.0 0.297 E -145.7 140.1 46.0 0.297 0.0 GNP
MG
HOH
 8.454
8.132
2.871
 CA
C
O
 O2G
MG
O
VAL B:45 B:45 41.0 0.265 E -151.2 144.0 NA NA NA
VAL C:45 C:45 24.0 0.155 E -130.6 160.5 NA NA NA
VAL D:45 D:45 32.0 0.206 E -151.9 152.1 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 VAL A:46 A:43 35.0 0.226 E -165.0 154.0 35.0 0.226 0.0 MG
GNP
HOH
 7.617
7.789
2.821
 CA
N
O
 MG
O2G
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 VAL A:43 A:43 31.0 0.2 E -152.4 118.4 0.0 0.0 0.2 B:Q59EY8:0.2
 MG
GTP
HOH
 7.572
7.849
5.686
 CA
N
O
 MG
O2G
O
VAL C:43 C:43 25.0 0.161 E -132.4 133.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 VAL A:43 A:43 32.0 0.206 E -144.6 136.1
af-p20338-f1 1 P20338 87.32 1e-141 VAL A:48 A:48 34.0 0.219 -116.5 121.5