Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41286335 . G A CCDS33030.1:NM_016154.4:c.143cGg>cAg_NP_057238.3:p.48R>Q Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 ARG A:65 A:48 75.0 0.333 E -151.4 132.1 75.0 0.333 0.0 HOH
 5.422
 N
 O
ARG B:65 B:48 73.0 0.324 E -150.7 132.6 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 LYS A:50 A:50 41.0 0.205 E -150.7 144.1 41.0 0.205 0.0 HOH
 3.102
 NZ
 O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 LYS A:50 A:50 49.0 0.245 E -154.8 142.1 49.0 0.245 0.0 TRS
HOH
 6.029
3.765
 N
CA
 O2
O
LYS B:50 B:50 45.0 0.225 E -154.6 143.3 NA NA NA
LYS C:50 C:50 53.0 0.265 E -159.4 140.8 NA NA NA
LYS D:50 D:50 37.0 0.185 E -159.5 142.8 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 LYS A:51 A:48 49.0 0.245 E -157.1 141.4 49.0 0.245 0.0 HOH
 2.870
 NZ
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 LYS A:48 A:48 45.0 0.225 E -152.5 139.4 14.0 0.07 0.155 B:Q59EY8:0.155
 HOH
 2.675
 NZ
 O
LYS C:48 C:48 40.0 0.2 E -157.3 139.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 ARG A:48 A:48 77.0 0.342 E -142.2 135.5
af-p20338-f1 1 P20338 87.32 1e-141 LYS A:53 A:53 46.0 0.23 E -148.9 138.3