Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41286344 . A C CCDS33030.1:NM_016154.4:c.152aAc>aCc_NP_057238.3:p.51N>T Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 ASN A:68 A:51 109.0 0.681 E -83.8 117.4 109.0 0.681 0.0
ASN B:68 B:51 113.0 0.706 E -103.2 117.1 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ASN A:53 A:53 83.0 0.519 E -98.8 121.9 83.0 0.519 0.0 HOH
 2.877
 O
 O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ASN A:53 A:53 88.0 0.55 E -100.8 109.4 88.0 0.55 0.0 HOH
 2.693
 O
 O
ASN B:53 B:53 88.0 0.55 E -100.4 108.8 NA NA NA
ASN C:53 C:53 92.0 0.575 E -103.6 113.4 NA NA NA
ASN D:53 D:53 90.0 0.562 E -107.6 109.2 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 ASN A:54 A:51 90.0 0.562 E -97.9 113.7 90.0 0.562 0.0 HOH
 2.922
 N
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 ASN A:51 A:51 96.0 0.6 E -92.0 111.2 96.0 0.6 0.0 HOH
 3.031
 N
 O
ASN C:51 C:51 90.0 0.562 E -96.3 120.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 ASN A:51 A:51 109.0 0.681 E -99.8 120.6
af-p20338-f1 1 P20338 87.32 1e-141 ASN A:56 A:56 86.0 0.537 E -97.4 121.2