Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41286352 . G A CCDS33030.1:NM_016154.4:c.160Ggg>Agg_NP_057238.3:p.54G>R Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 GLY A:71 A:54 60.0 0.8 T 70.5 11.5 60.0 0.8 0.0
GLY B:71 B:54 81.0 1.0 T 55.2 24.5 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 GLY A:56 A:56 57.0 0.76 T 99.2 0.9 57.0 0.76 0.0 HOH
 3.573
 O
 O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 GLY A:56 A:56 49.0 0.653 T 88.2 -4.6 49.0 0.653 0.0 HOH
 2.562
 O
 O
GLY B:56 B:56 49.0 0.653 T 90.2 -4.0 NA NA NA
GLY C:56 C:56 50.0 0.667 T 92.1 -7.1 NA NA NA
GLY D:56 D:56 48.0 0.64 T 95.8 -3.0 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 GLY A:57 A:54 54.0 0.72 T 89.7 -18.3 54.0 0.72 0.0 HOH
 2.818
 O
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 GLY A:54 A:54 67.0 0.893 T 64.4 22.9 67.0 0.893 0.0 HOH
 2.647
 N
 O
GLY C:54 C:54 54.0 0.72 T 85.3 -12.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 GLY A:54 A:54 60.0 0.8 T 77.4 5.8
af-p20338-f1 1 P20338 87.32 1e-141 GLY A:59 A:59 53.0 0.707 T 84.5 -1.5