Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41289693 . C A CCDS33030.1:NM_016154.4:c.223Cgg>Agg_NP_057238.3:p.75R>R Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 ARG A:92 A:75 184.0 0.818 H -64.2 -20.7 184.0 0.818 0.0 UNX
HOH
 4.253
2.913
 CG
O
 UNK
O
ARG B:92 B:75 92.0 NA H -51.6 -38.1 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ARG A:77 A:77 106.0 0.471 H -57.4 -44.7 106.0 0.471 0.0 HOH
 2.959
 NH2
 O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ARG A:77 A:77 111.0 0.493 H -60.3 -25.1 111.0 0.493 0.0 HOH
 2.664
 O
 O
ARG B:77 B:77 107.0 0.476 H -61.7 -27.2 NA NA NA
ARG C:77 C:77 106.0 0.471 H -66.5 -24.7 NA NA NA
ARG D:77 D:77 86.0 0.382 H -59.9 -27.2 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 ARG A:78 A:75 49.0 0.218 G -58.0 -40.7 49.0 0.218 0.0 HOH
 3.006
 NH1
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 ARG A:75 A:75 109.0 0.484 H -59.9 -32.5 109.0 0.484 0.0 HOH
 2.839
 O
 O
ARG C:75 C:75 92.0 0.409 H -68.1 -23.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 ARG A:75 A:75 107.0 0.476 H -59.7 -29.3
af-p20338-f1 1 P20338 87.32 1e-141 ARG A:80 A:80 122.0 0.542 H -56.5 -33.1