Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 41289694 | . | G | A | CCDS33030.1:NM_016154.4:c.224cGg>cAg_NP_057238.3:p.75R>Q | Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2o52 | 1 | P61018 | 100.0 | 1e-131 |
X-RAY |
2006-12-19 | ARG | A:92 | A:75 | 184.0 | 0.818 | H | -64.2 | -20.7 | 184.0 | 0.818 | 0.0 |
UNX HOH |
4.253 2.913 |
CG O |
UNK O |
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ARG | B:92 | B:75 | 92.0 | NA | H | -51.6 | -38.1 | NA | NA | NA | |||||||||||||
2bmd | 1 | P20338 | 89.13 | 2e-123 |
X-RAY |
2005-04-25 | ARG | A:77 | A:77 | 106.0 | 0.471 | H | -57.4 | -44.7 | 106.0 | 0.471 | 0.0 |
HOH |
2.959 |
NH2 |
O |
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2bme | 1 | P20338 | 89.13 | 2e-123 |
X-RAY |
2005-04-25 | ARG | A:77 | A:77 | 111.0 | 0.493 | H | -60.3 | -25.1 | 111.0 | 0.493 | 0.0 |
HOH |
2.664 |
O |
O |
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ARG | B:77 | B:77 | 107.0 | 0.476 | H | -61.7 | -27.2 | NA | NA | NA | |||||||||||||
ARG | C:77 | C:77 | 106.0 | 0.471 | H | -66.5 | -24.7 | NA | NA | NA | |||||||||||||
ARG | D:77 | D:77 | 86.0 | 0.382 | H | -59.9 | -27.2 | NA | NA | NA | |||||||||||||
1yu9 | 1 | P20338 | 88.3 | 2e-112 |
X-RAY |
2005-07-26 | ARG | A:78 | A:75 | 49.0 | 0.218 | G | -58.0 | -40.7 | 49.0 | 0.218 | 0.0 |
HOH |
3.006 |
NH1 |
O |
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1z0k | 1 | P20338 | 87.72 | 2e-111 |
X-RAY |
2005-07-26 | ARG | A:75 | A:75 | 109.0 | 0.484 | H | -59.9 | -32.5 | 109.0 | 0.484 | 0.0 |
HOH |
2.839 |
O |
O |
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ARG | C:75 | C:75 | 92.0 | 0.409 | H | -68.1 | -23.3 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p61018-f1 | 1 | P61018 | 100.0 | 3e-161 | ARG | A:75 | A:75 | 107.0 | 0.476 | H | -59.7 | -29.3 | |
af-p20338-f1 | 1 | P20338 | 87.32 | 1e-141 | ARG | A:80 | A:80 | 122.0 | 0.542 | H | -56.5 | -33.1 |