Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41289702 . T A CCDS33030.1:NM_016154.4:c.232Tac>Aac_NP_057238.3:p.78Y>N Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 TYR A:95 A:78 2.0 0.009 H -74.7 -33.1 2.0 0.009 0.0 UNX
HOH
 7.611
2.677
 N
OH
 UNK
O
TYR B:95 B:78 2.0 0.009 H -73.7 -35.0 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 TYR A:80 A:80 0.0 0.0 H -83.0 -23.7 0.0 0.0 0.0 GOL
HOH
 6.918
2.775
 OH
OH
 C3
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 TYR A:80 A:80 0.0 0.0 S -62.2 -39.6 0.0 0.0 0.0 HOH
 2.537
 OH
 O
TYR B:80 B:80 1.0 0.004 -62.5 -39.8 NA NA NA
TYR C:80 C:80 0.0 0.0 -76.1 -40.7 NA NA NA
TYR D:80 D:80 0.0 0.0 -71.6 -41.1 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 TYR A:81 A:78 0.0 0.0 G -79.4 -26.1 0.0 0.0 0.0 HOH
 2.644
 OH
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 TYR A:78 A:78 0.0 0.0 -66.3 -47.3 0.0 0.0 0.0 HOH
 2.650
 OH
 O
TYR C:78 C:78 0.0 0.0 T -70.5 -40.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 TYR A:78 A:78 0.0 0.0 T -66.7 -35.5
af-p20338-f1 1 P20338 87.32 1e-141 TYR A:83 A:83 0.0 0.0 H -60.9 -39.5