Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41289741 . A C CCDS33030.1:NM_016154.4:c.271Acc>Ccc_NP_057238.3:p.91T>P Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 THR A:108 A:91 31.0 0.221 T -87.5 3.1 31.0 0.221 0.0 GDP
HOH
 7.359
3.273
 CG2
O
 N2
O
THR B:108 B:91 18.0 0.129 T -90.9 -0.0 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 THR A:93 A:93 24.0 0.171 T -96.1 0.3 24.0 0.171 0.0 GDP
HOH
 7.331
2.852
 CG2
OG1
 N2
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 THR A:93 A:93 25.0 0.179 T -91.6 -1.7 25.0 0.179 0.0 GNP
HOH
 7.527
3.054
 CG2
O
 N2
O
THR B:93 B:93 26.0 0.186 T -91.1 -1.1 NA NA NA
THR C:93 C:93 26.0 0.186 T -92.9 1.3 NA NA NA
THR D:93 D:93 23.0 0.164 T -91.1 -2.2 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 THR A:94 A:91 22.0 0.157 T -92.3 -1.0 22.0 0.157 0.0 GNP
HOH
 7.373
2.921
 CG2
O
 N2
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 THR A:91 A:91 24.0 0.171 T -92.0 -3.1 24.0 0.171 0.0 GTP
HOH
 7.213
2.850
 CG2
OG1
 N2
O
THR C:91 C:91 26.0 0.186 T -96.1 -4.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 THR A:91 A:91 23.0 0.164 T -94.7 6.5
af-p20338-f1 1 P20338 87.32 1e-141 THR A:96 A:96 27.0 0.193 T -94.1 11.4