Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41289831 . A C CCDS33030.1:NM_016154.4:c.281gAg>gCg_NP_057238.3:p.94E>A Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 GLU A:111 A:94 141.0 0.742 H -59.3 -42.0 141.0 0.742 0.0 HOH
 5.748
 O
 O
GLU B:111 B:94 133.0 0.7 H -61.4 -36.1 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 GLU A:96 A:96 127.0 0.668 H -58.4 -34.6 127.0 0.668 0.0 GOL
GOL
HOH
 9.374
7.044
2.525
 O
O
OE1
 C2
O1
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 GLU A:96 A:96 114.0 0.6 H -54.2 -40.4 114.0 0.6 0.0 HOH
 2.908
 OE2
 O
GLU B:96 B:96 138.0 0.726 H -52.6 -36.4 NA NA NA
GLU C:96 C:96 122.0 0.642 H -58.9 -33.7 NA NA NA
GLU D:96 D:96 122.0 0.642 H -52.5 -41.4 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 GLU A:97 A:94 141.0 0.742 H -57.0 -40.7 141.0 0.742 0.0 SO4
HOH
 8.410
2.667
 OE2
OE2
 O2
O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 GLU A:94 A:94 61.0 NA H -59.8 -36.9 61.0 NA NA HOH
 2.876
 N
 O
GLU C:94 C:94 144.0 0.758 H -52.5 -45.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 GLU A:94 A:94 148.0 0.779 H -60.7 -42.0
af-p20338-f1 1 P20338 87.32 1e-141 GLU A:99 A:99 141.0 0.742 H -60.8 -45.4