Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 41289870 | . | G | A | CCDS33030.1:NM_016154.4:c.320cGc>cAc_NP_057238.3:p.107R>H | Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2o52 | 1 | P61018 | 100.0 | 1e-131 |
X-RAY |
2006-12-19 | ARG | A:124 | A:107 | 75.0 | 0.333 | H | -73.5 | -22.7 | 75.0 | 0.333 | 0.0 |
HOH |
6.575 |
C |
O |
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ARG | B:124 | B:107 | 87.0 | 0.387 | H | -75.5 | -28.7 | NA | NA | NA | |||||||||||||
2bmd | 1 | P20338 | 89.13 | 2e-123 |
X-RAY |
2005-04-25 | ARG | A:109 | A:109 | 60.0 | 0.267 | H | -70.2 | -30.9 | 60.0 | 0.267 | 0.0 |
HOH |
2.550 |
NH2 |
O |
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2bme | 1 | P20338 | 89.13 | 2e-123 |
X-RAY |
2005-04-25 | ARG | A:109 | A:109 | 116.0 | 0.516 | H | -64.5 | -36.0 | 116.0 | 0.516 | 0.0 |
HOH |
2.894 |
NH1 |
O |
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ARG | B:109 | B:109 | 153.0 | 0.68 | H | -62.0 | -36.8 | NA | NA | NA | |||||||||||||
ARG | C:109 | C:109 | 75.0 | 0.333 | H | -73.2 | -36.6 | NA | NA | NA | |||||||||||||
ARG | D:109 | D:109 | 60.0 | 0.267 | H | -73.7 | -30.2 | NA | NA | NA | |||||||||||||
1yu9 | 1 | P20338 | 88.3 | 2e-112 |
X-RAY |
2005-07-26 | ARG | A:110 | A:107 | 65.0 | 0.289 | H | -75.8 | -18.9 | 65.0 | 0.289 | 0.0 |
HOH |
2.732 |
O |
O |
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1z0k | 1 | P20338 | 87.72 | 2e-111 |
X-RAY |
2005-07-26 | ARG | A:107 | A:107 | 36.0 | 0.16 | H | -69.2 | -27.4 | 36.0 | 0.16 | 0.0 |
HOH |
2.707 |
NE |
O |
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ARG | C:107 | C:107 | 68.0 | 0.302 | H | -74.1 | -27.0 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p61018-f1 | 1 | P61018 | 100.0 | 3e-161 | ARG | A:107 | A:107 | 111.0 | 0.493 | H | -65.8 | -32.5 | |
af-p20338-f1 | 1 | P20338 | 87.32 | 1e-141 | ARG | A:112 | A:112 | 117.0 | 0.52 | H | -67.5 | -33.9 |