Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41289884 . C A CCDS33030.1:NM_016154.4:c.334Ccc>Acc_NP_057238.3:p.112P>T Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 PRO A:129 A:112 100.0 0.69 T -66.8 -10.7 100.0 0.69 0.0 HOH
 6.817
 C
 O
PRO B:129 B:112 96.0 0.662 T -57.1 -19.5 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 GLN A:114 A:114 122.0 0.678 T -63.3 -26.9 122.0 0.678 0.0 HOH
 2.722
 NE2
 O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 GLN A:114 A:114 146.0 0.811 T -60.3 -12.8 146.0 0.811 0.0 HOH
 2.911
 N
 O
GLN B:114 B:114 165.0 0.917 T -65.8 -9.0 NA NA NA
GLN C:114 C:114 172.0 0.956 T -63.6 -23.4 NA NA NA
GLN D:114 D:114 114.0 0.633 S 70.5 -10.0 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 GLN A:115 A:112 168.0 0.933 T -54.2 -27.1 168.0 0.933 0.0 HOH
 2.481
 NE2
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 GLN A:112 A:112 143.0 0.794 T -60.4 -12.5 143.0 0.794 0.0 HOH
 2.474
 O
 O
GLN C:112 C:112 168.0 0.933 T -67.4 -6.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 PRO A:112 A:112 99.0 0.683 T -54.9 -26.8
af-p20338-f1 1 P20338 87.32 1e-141 GLN A:117 A:117 153.0 0.85 T -56.8 -29.6