Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 41289935 | . | C | A | CCDS33030.1:NM_016154.4:c.385Cgg>Agg_NP_057238.3:p.129R>R | Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA. |
---|---|---|---|---|---|---|---|
|
|
|
|
PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2o52 | 1 | P61018 | 100.0 | 1e-131 |
X-RAY |
2006-12-19 | ARG | A:146 | A:129 | 56.0 | 0.249 | -46.7 | 135.9 | 56.0 | 0.249 | 0.0 |
HOH |
3.545 |
NH1 |
O |
|||
ARG | B:146 | B:129 | 71.0 | 0.316 | -53.7 | 132.1 | NA | NA | NA | ||||||||||||||
2bmd | 1 | P20338 | 89.13 | 2e-123 |
X-RAY |
2005-04-25 | ARG | A:131 | A:131 | 80.0 | 0.356 | -64.6 | 130.3 | 80.0 | 0.356 | 0.0 |
HOH |
2.783 |
O |
O |
|||
2bme | 1 | P20338 | 89.13 | 2e-123 |
X-RAY |
2005-04-25 | ARG | A:131 | A:131 | 70.0 | 0.311 | -53.9 | 131.6 | 70.0 | 0.311 | 0.0 |
TRS HOH |
6.191 3.400 |
NH2 NH1 |
O3 O |
|||
ARG | B:131 | B:131 | 76.0 | 0.338 | -51.7 | 135.6 | NA | NA | NA | ||||||||||||||
ARG | C:131 | C:131 | 77.0 | 0.342 | -49.1 | 131.6 | NA | NA | NA | ||||||||||||||
ARG | D:131 | D:131 | 64.0 | 0.284 | -59.7 | 129.4 | NA | NA | NA | ||||||||||||||
1yu9 | 1 | P20338 | 88.3 | 2e-112 |
X-RAY |
2005-07-26 | ARG | A:132 | A:129 | 69.0 | 0.307 | -57.7 | 130.9 | 69.0 | 0.307 | 0.0 |
HOH |
2.784 |
O |
O |
|||
1z0k | 1 | P20338 | 87.72 | 2e-111 |
X-RAY |
2005-07-26 | ARG | A:129 | A:129 | 66.0 | 0.293 | -53.9 | 128.8 | 66.0 | 0.293 | 0.0 |
HOH |
3.090 |
O |
O |
|||
ARG | C:129 | C:129 | 78.0 | 0.347 | -54.9 | 138.3 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p61018-f1 | 1 | P61018 | 100.0 | 3e-161 | ARG | A:129 | A:129 | 55.0 | 0.244 | -59.4 | 127.1 | ||
af-p20338-f1 | 1 | P20338 | 87.32 | 1e-141 | ARG | A:134 | A:134 | 63.0 | 0.28 | -61.4 | 123.0 |