Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41289945 . C A CCDS33030.1:NM_016154.4:c.395aCt>aAt_NP_057238.3:p.132T>N Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 THR A:149 A:132 73.0 0.521 -86.1 148.8 73.0 0.521 0.0 HOH
 3.161
 O
 O
THR B:149 B:132 71.0 0.507 -78.2 150.3 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 THR A:134 A:134 68.0 0.486 -78.5 155.2 68.0 0.486 0.0 GOL
HOH
 9.303
3.146
 O
O
 O2
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 THR A:134 A:134 70.0 0.5 -76.0 149.0 70.0 0.5 0.0 TRS
HOH
 9.025
3.442
 C
CA
 O3
O
THR B:134 B:134 70.0 0.5 -74.5 158.5 NA NA NA
THR C:134 C:134 70.0 0.5 -78.8 156.7 NA NA NA
THR D:134 D:134 69.0 0.493 -77.2 150.0 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 THR A:135 A:132 71.0 0.507 -75.6 149.0 71.0 0.507 0.0 HOH
 2.589
 OG1
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 THR A:132 A:132 70.0 0.5 -77.8 149.9 70.0 0.5 0.0 HOH
 3.535
 CA
 O
THR C:132 C:132 68.0 0.486 -80.4 155.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 THR A:132 A:132 71.0 0.507 -74.9 149.8
af-p20338-f1 1 P20338 87.32 1e-141 THR A:137 A:137 70.0 0.5 -68.3 150.2