Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 41289962 . C A CCDS33030.1:NM_016154.4:c.412Cgc>Agc_NP_057238.3:p.138R>S Homo sapiens RAB4B, member RAS oncogene family (RAB4B), mRNA.
pdb_id: 
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label_comp_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o52 1 P61018 100.0 1e-131 X-RAY
 2006-12-19 ARG A:155 A:138 86.0 NA H -64.9 -44.5 86.0 NA NA HOH
 8.805
 N
 O
ARG B:155 B:138 119.0 NA H -58.1 -47.8 NA NA NA
2bmd 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ARG A:140 A:140 148.0 0.658 H -64.9 -42.9 148.0 0.658 0.0 GOL
HOH
 8.041
3.330
 C
NH1
 O3
O
2bme 1 P20338 89.13 2e-123 X-RAY
 2005-04-25 ARG A:140 A:140 176.0 0.782 H -67.0 -45.3 176.0 0.782 0.0 BME
HOH
 7.595
3.779
 O
CB
 S2
O
ARG B:140 B:140 178.0 0.791 H -67.3 -49.7 NA NA NA
ARG C:140 C:140 167.0 0.742 H -65.9 -48.0 NA NA NA
ARG D:140 D:140 174.0 0.773 H -64.6 -49.3 NA NA NA
1yu9 1 P20338 88.3 2e-112 X-RAY
 2005-07-26 ARG A:141 A:138 168.0 0.747 H -68.5 -36.6 168.0 0.747 0.0 HOH
 3.163
 NH2
 O
1z0k 1 P20338 87.72 2e-111 X-RAY
 2005-07-26 ARG A:138 A:138 144.0 0.64 H -62.5 -50.3 144.0 0.64 0.0 HOH
 2.398
 NH2
 O
ARG C:138 C:138 167.0 0.742 H -69.3 -38.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61018-f1 1 P61018 100.0 3e-161 ARG A:138 A:138 137.0 0.609 H -61.5 -47.7
af-p20338-f1 1 P20338 87.32 1e-141 ARG A:143 A:143 138.0 0.613 H -61.9 -47.4