Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 42485662 | . | T | A | CCDS12594.1:NM_152296.4:c.1429Aaa>Taa_NP_689509.1:p.477K>* | Homo sapiens ATPase Na+/K+ transporting subunit alpha 3 (ATP1A3), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3wgu | 1 | I7HD36 | 88.01 | 0.0 |
X-RAY |
2013-10-09 | LYS | A:480 | A:480 | 16.0 | 0.08 | 61.3 | 25.3 | 16.0 | 0.08 | 0.0 |
MG ALF MG ADP HOH |
8.376 6.354 9.996 3.038 9.272 |
NZ NZ NZ NZ CA |
MG F3 MG O2A O |
|||
LYS | D:480 | C:480 | 17.0 | 0.085 | 69.4 | 24.3 | NA | NA | NA | ||||||||||||||
3wgv | 1 | I7HD36 | 88.01 | 0.0 |
X-RAY |
2013-10-09 | LYS | A:480 | A:480 | 14.0 | 0.07 | 62.8 | 32.7 | 14.0 | 0.07 | 0.0 |
MG ALF ADP HOH |
8.664 6.574 2.745 9.032 |
NZ NZ NZ CA |
MG F3 O1A O |
|||
LYS | D:480 | C:480 | 17.0 | 0.085 | 72.5 | 30.2 | NA | NA | NA | ||||||||||||||
4xe5 | 1 | Q08DA1 | 87.61 | 0.0 |
X-RAY |
2016-03-09 | LYS | A:485 | A:485 | 71.0 | 0.355 | 43.8 | 40.2 | 71.0 | 0.355 | 0.0 | |||||||
4hqj | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2013-10-02 | LYS | A:485 | A:480 | 25.0 | 0.125 | T | 75.8 | 6.7 | 25.0 | 0.125 | 0.0 |
ADP ALF |
3.961 7.402 |
CD NZ |
C5' F4 |
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LYS | D:485 | C:480 | 23.0 | 0.115 | T | 74.8 | 6.6 | NA | NA | NA | |||||||||||||
4hyt | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2013-06-26 | LYS | A:485 | A:480 | 89.0 | 0.445 | 41.7 | 39.2 | 89.0 | 0.445 | 0.0 | |||||||
LYS | D:485 | C:480 | 102.0 | 0.51 | 56.1 | 53.0 | NA | NA | NA | ||||||||||||||
4res | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2015-01-28 | LYS | A:485 | A:480 | 25.0 | 0.125 | T | 43.7 | 38.9 | 25.0 | 0.125 | 0.0 | ||||||
LYS | D:485 | C:480 | 25.0 | 0.125 | T | 43.9 | 39.4 | NA | NA | NA | |||||||||||||
4ret | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2015-01-28 | LYS | A:485 | A:480 | 93.0 | 0.465 | 43.2 | 43.0 | 93.0 | 0.465 | 0.0 | |||||||
LYS | D:485 | C:480 | 96.0 | 0.48 | 43.1 | 42.8 | NA | NA | NA | ||||||||||||||
7evx | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-07-07 | LYS | A:485 | A:480 | 94.0 | 0.47 | -52.1 | 105.9 | 94.0 | 0.47 | 0.0 | |||||||
LYS | D:485 | C:480 | 93.0 | 0.465 | -50.0 | 106.3 | NA | NA | NA | ||||||||||||||
7d91 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 95.0 | 0.475 | -42.0 | 111.5 | 95.0 | 0.475 | 0.0 | |||||||
7d92 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 90.0 | 0.45 | -46.2 | 115.8 | 90.0 | 0.45 | 0.0 | |||||||
7d93 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 99.0 | 0.495 | -48.5 | 107.9 | 99.0 | 0.495 | 0.0 | |||||||
LYS | C:480 | C:480 | 94.0 | 0.47 | -52.0 | 106.1 | NA | NA | NA | ||||||||||||||
7d94 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 102.0 | 0.51 | -50.0 | 108.0 | 102.0 | 0.51 | 0.0 | |||||||
LYS | D:480 | C:480 | 93.0 | 0.465 | -51.8 | 107.2 | NA | NA | NA | ||||||||||||||
7ddf | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 98.0 | 0.49 | -41.8 | 106.7 | 98.0 | 0.49 | 0.0 | |||||||
LYS | D:480 | C:480 | 101.0 | 0.505 | -42.3 | 109.5 | NA | NA | NA | ||||||||||||||
7ddh | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 95.0 | 0.475 | -63.1 | 113.7 | 95.0 | 0.475 | 0.0 | |||||||
LYS | D:480 | C:480 | 93.0 | 0.465 | -63.2 | 114.2 | NA | NA | NA | ||||||||||||||
7ddi | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 79.0 | 0.395 | -58.1 | 137.3 | 79.0 | 0.395 | 0.0 | |||||||
LYS | D:480 | C:480 | 79.0 | 0.395 | -58.1 | 139.4 | NA | NA | NA | ||||||||||||||
7ddj | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 102.0 | 0.51 | -48.6 | 107.9 | 102.0 | 0.51 | 0.0 | |||||||
LYS | D:480 | C:480 | 91.0 | 0.455 | -51.2 | 107.2 | NA | NA | NA | ||||||||||||||
7ddk | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 98.0 | 0.49 | -58.6 | 129.8 | 98.0 | 0.49 | 0.0 | |||||||
LYS | D:480 | C:480 | 99.0 | 0.495 | -59.7 | 130.0 | NA | NA | NA | ||||||||||||||
7ddl | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | LYS | A:480 | A:480 | 99.0 | 0.495 | -48.7 | 110.0 | 99.0 | 0.495 | 0.0 | |||||||
LYS | D:480 | C:480 | 100.0 | 0.5 | -50.4 | 109.7 | NA | NA | NA | ||||||||||||||
3b8e | 1 | P05024 | 87.58 | 0.0 |
X-RAY |
2007-12-18 | LYS | A:462 | A:480 | 84.0 | 0.42 | 55.8 | 156.5 | 84.0 | 0.42 | 0.0 | |||||||
LYS | D:462 | C:480 | 84.0 | 0.42 | 55.6 | 156.9 | NA | NA | NA | ||||||||||||||
3kdp | 1 | P05024 | 87.58 | 0.0 |
X-RAY |
2010-02-16 | LYS | A:462 | A:480 | 81.0 | 0.405 | 54.6 | 16.6 | 81.0 | 0.405 | 0.0 | |||||||
LYS | D:462 | C:480 | 82.0 | 0.41 | 54.4 | 16.3 | NA | NA | NA | ||||||||||||||
3n23 | 1 | P05024 | 87.8 | 0.0 |
X-RAY |
2011-01-19 | LYS | A:456 | A:480 | 92.0 | 0.46 | 69.8 | 11.0 | 92.0 | 0.46 | 0.0 | |||||||
LYS | D:456 | C:480 | 92.0 | 0.46 | 70.3 | 10.3 | NA | NA | NA | ||||||||||||||
2zxe | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2009-05-19 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 24.0 | 89.0 | 0.445 | 0.0 |
HOH |
7.034 |
CG |
O |
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3a3y | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2009-09-08 | LYS | A:492 | A:487 | 98.0 | 0.49 | 53.6 | 29.1 | 98.0 | 0.49 | 0.0 |
HOH |
8.508 |
O |
O |
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5avq | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 23.9 | 89.0 | 0.445 | 0.0 | |||||||
5avr | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 24.0 | 89.0 | 0.445 | 0.0 | |||||||
5avs | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 24.0 | 89.0 | 0.445 | 0.0 | |||||||
5avt | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.4 | 24.1 | 89.0 | 0.445 | 0.0 | |||||||
5avu | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.6 | 24.0 | 89.0 | 0.445 | 0.0 | |||||||
5avv | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 90.0 | 0.45 | 60.5 | 23.9 | 90.0 | 0.45 | 0.0 | |||||||
5avw | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 24.0 | 89.0 | 0.445 | 0.0 | |||||||
5avx | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 90.0 | 0.45 | 60.6 | 24.0 | 90.0 | 0.45 | 0.0 | |||||||
5avy | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 90.0 | 0.45 | 60.6 | 23.9 | 90.0 | 0.45 | 0.0 | |||||||
5avz | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.6 | 23.9 | 89.0 | 0.445 | 0.0 | |||||||
5aw0 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.6 | 23.9 | 89.0 | 0.445 | 0.0 | |||||||
5aw1 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 90.0 | 0.45 | 60.5 | 24.0 | 90.0 | 0.45 | 0.0 | |||||||
5aw2 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 90.0 | 0.45 | 60.4 | 24.0 | 90.0 | 0.45 | 0.0 | |||||||
5aw3 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 90.0 | 0.45 | 60.5 | 24.0 | 90.0 | 0.45 | 0.0 | |||||||
5aw4 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 24.1 | 89.0 | 0.445 | 0.0 | |||||||
5aw5 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 90.0 | 0.45 | 60.5 | 24.1 | 90.0 | 0.45 | 0.0 | |||||||
5aw6 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 24.0 | 89.0 | 0.445 | 0.0 | |||||||
5aw7 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.6 | 24.0 | 89.0 | 0.445 | 0.0 | |||||||
5aw8 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 89.0 | 0.445 | 60.5 | 24.0 | 89.0 | 0.445 | 0.0 | |||||||
5aw9 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | LYS | A:492 | A:487 | 91.0 | 0.455 | 58.9 | 21.1 | 91.0 | 0.455 | 0.0 |
HOH |
7.084 |
CB |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p13637-f1 | 1 | P13637 | 100.0 | 0.0 | LYS | A:477 | A:477 | 85.0 | 0.425 | 59.8 | 20.1 | ||
af-p50993-f1 | 1 | P50993 | 88.81 | 0.0 | LYS | A:485 | A:485 | 85.0 | 0.425 | 58.7 | 22.0 | ||
af-p05023-f1 | 1 | P05023 | 88.03 | 0.0 | LYS | A:487 | A:487 | 84.0 | 0.42 | 59.9 | 21.3 |