Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 42489116 | . | C | A | CCDS12594.1:NM_152296.4:c.947gGc>gTc_NP_689509.1:p.316G>V | Homo sapiens ATPase Na+/K+ transporting subunit alpha 3 (ATP1A3), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3wgu | 1 | I7HD36 | 88.01 | 0.0 |
X-RAY |
2013-10-09 | GLY | A:319 | A:319 | 3.0 | 0.04 | H | -73.9 | -36.6 | 3.0 | 0.04 | 0.0 |
NA NA HOH |
7.104 8.376 8.919 |
O O O |
NA NA O |
||
GLY | D:319 | C:319 | 1.0 | 0.013 | H | -54.9 | -50.6 | NA | NA | NA | |||||||||||||
3wgv | 1 | I7HD36 | 88.01 | 0.0 |
X-RAY |
2013-10-09 | GLY | A:319 | A:319 | 3.0 | 0.04 | H | -63.9 | -40.1 | 3.0 | 0.04 | 0.0 |
NA NA HOH |
6.886 8.312 8.787 |
O O O |
NA NA O |
||
GLY | D:319 | C:319 | 1.0 | 0.013 | H | -63.9 | -49.1 | NA | NA | NA | |||||||||||||
4xe5 | 1 | Q08DA1 | 87.61 | 0.0 |
X-RAY |
2016-03-09 | GLY | A:324 | A:324 | 28.0 | 0.373 | H | -53.7 | -46.5 | 28.0 | 0.373 | 0.0 |
OBN HOH |
3.801 8.804 |
O O |
C17 O |
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4hqj | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2013-10-02 | GLY | A:324 | A:319 | 0.0 | 0.0 | H | -54.3 | -56.3 | 0.0 | 0.0 | 0.0 |
NA NA |
7.018 7.437 |
O O |
NA NA |
||
GLY | D:324 | C:319 | 0.0 | 0.0 | H | -54.5 | -54.3 | NA | NA | NA | |||||||||||||
4hyt | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2013-06-26 | GLY | A:324 | A:319 | 25.0 | 0.333 | H | -50.7 | -59.1 | 25.0 | 0.333 | 0.0 |
OBN HOH |
3.724 8.398 |
O O |
C22 O |
||
GLY | D:324 | C:319 | 26.0 | 0.347 | H | -51.7 | -58.8 | NA | NA | NA | |||||||||||||
4res | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2015-01-28 | GLY | A:324 | A:319 | 20.0 | 0.267 | H | -52.4 | -48.9 | 20.0 | 0.267 | 0.0 |
BUF K |
3.407 7.358 |
O O |
C17 K |
||
GLY | D:324 | C:319 | 21.0 | 0.28 | H | -51.4 | -49.2 | NA | NA | NA | |||||||||||||
4ret | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2015-01-28 | GLY | A:324 | A:319 | 26.0 | 0.347 | H | -57.8 | -52.8 | 26.0 | 0.347 | 0.0 |
DGX HOH |
3.141 8.312 |
CA O |
O12 O |
||
GLY | D:324 | C:319 | 26.0 | 0.347 | H | -58.2 | -52.7 | NA | NA | NA | |||||||||||||
7evx | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-07-07 | GLY | A:324 | A:319 | 23.0 | 0.307 | H | -62.7 | -40.1 | 23.0 | 0.307 | 0.0 |
JEO HOH |
4.219 7.854 |
CA O |
CAH O |
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GLY | D:324 | C:319 | 16.0 | 0.213 | H | -63.0 | -38.8 | NA | NA | NA | |||||||||||||
7d91 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 17.0 | 0.227 | H | -64.7 | -34.8 | 17.0 | 0.227 | 0.0 |
MG HOH |
9.283 6.979 |
O O |
MG O |
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7d92 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 24.0 | 0.32 | H | -64.1 | -38.2 | 24.0 | 0.32 | 0.0 |
MG H0C HOH |
9.816 3.534 6.702 |
O O O |
MG C17 O |
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7d93 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 22.0 | 0.293 | H | -64.1 | -40.7 | 22.0 | 0.293 | 0.0 |
H0C HOH |
3.817 6.676 |
O O |
C17 O |
||
GLY | C:319 | C:319 | 25.0 | 0.333 | H | -63.1 | -39.7 | NA | NA | NA | |||||||||||||
7d94 | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 21.0 | 0.28 | H | -63.3 | -41.4 | 21.0 | 0.28 | 0.0 |
MG BUF HOH |
8.219 3.632 6.538 |
O O O |
MG C21 O |
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GLY | D:319 | C:319 | 23.0 | 0.307 | H | -63.0 | -40.9 | NA | NA | NA | |||||||||||||
7ddf | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 18.0 | 0.24 | H | -62.5 | -38.9 | 18.0 | 0.24 | 0.0 |
HOH |
8.088 |
O |
O |
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GLY | D:319 | C:319 | 20.0 | 0.267 | H | -62.7 | -38.5 | NA | NA | NA | |||||||||||||
7ddh | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 23.0 | 0.307 | H | -63.7 | -44.4 | 23.0 | 0.307 | 0.0 |
MG DGX HOH |
9.846 3.176 7.810 |
O CA O |
MG O12 O |
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GLY | D:319 | C:319 | 16.0 | 0.213 | H | -63.5 | -43.9 | NA | NA | NA | |||||||||||||
7ddi | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 21.0 | 0.28 | H | -60.7 | -44.6 | 21.0 | 0.28 | 0.0 |
MG F9R HOH |
9.718 3.204 7.709 |
O O O |
MG C22 O |
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GLY | D:319 | C:319 | 21.0 | 0.28 | H | -60.5 | -43.4 | NA | NA | NA | |||||||||||||
7ddj | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 21.0 | 0.28 | H | -63.2 | -41.2 | 21.0 | 0.28 | 0.0 |
MG OBN HOH |
9.901 3.318 6.872 |
O O O |
MG C22 O |
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GLY | D:319 | C:319 | 22.0 | 0.293 | H | -63.3 | -41.0 | NA | NA | NA | |||||||||||||
7ddk | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 21.0 | 0.28 | H | -67.1 | -48.7 | 21.0 | 0.28 | 0.0 |
MG E4R HOH |
9.904 2.937 8.043 |
O CA O |
MG O2 O |
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GLY | D:319 | C:319 | 23.0 | 0.307 | H | -67.1 | -47.9 | NA | NA | NA | |||||||||||||
7ddl | 1 | P05024 | 87.51 | 0.0 |
X-RAY |
2021-01-27 | GLY | A:319 | A:319 | 20.0 | 0.267 | H | -64.3 | -40.2 | 20.0 | 0.267 | 0.0 |
MG BUF HOH |
9.909 3.609 7.735 |
O O O |
MG C21 O |
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GLY | D:319 | C:319 | 22.0 | 0.293 | H | -64.3 | -39.7 | NA | NA | NA | |||||||||||||
3b8e | 1 | P05024 | 87.58 | 0.0 |
X-RAY |
2007-12-18 | GLY | A:301 | A:319 | 0.0 | 0.0 | H | -87.0 | -67.6 | 0.0 | 0.0 | 0.0 |
RB |
7.150 |
O |
RB |
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GLY | D:301 | C:319 | 2.0 | 0.027 | H | -74.0 | -73.9 | NA | NA | NA | |||||||||||||
3kdp | 1 | P05024 | 87.58 | 0.0 |
X-RAY |
2010-02-16 | GLY | A:301 | A:319 | 0.0 | 0.0 | H | -74.0 | -65.0 | 0.0 | 0.0 | 0.0 |
RB |
7.610 |
O |
RB |
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GLY | D:301 | C:319 | 1.0 | 0.013 | H | -94.3 | -70.4 | NA | NA | NA | |||||||||||||
3n23 | 1 | P05024 | 87.8 | 0.0 |
X-RAY |
2011-01-19 | GLY | A:295 | A:319 | 27.0 | 0.36 | T | -59.0 | -58.7 | 27.0 | 0.36 | 0.0 |
OBN |
3.827 |
O |
O23 |
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GLY | D:295 | C:319 | 27.0 | 0.36 | T | -57.8 | -58.9 | NA | NA | NA | |||||||||||||
2zxe | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2009-05-19 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.7 | -44.2 | 0.0 | 0.0 | 0.0 |
K HOH |
7.350 3.998 |
O N |
K O |
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3a3y | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2009-09-08 | GLY | A:331 | A:326 | 36.0 | 0.48 | H | -47.9 | -62.4 | 36.0 | 0.48 | 0.0 |
K OBN HOH |
9.561 2.659 9.883 |
O O CA |
K C22 O |
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5avq | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.7 | -44.2 | 0.0 | 0.0 | 0.0 |
K TL |
7.350 7.350 |
O O |
K TL |
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5avr | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.7 | -44.2 | 0.0 | 0.0 | 0.0 |
K TL |
7.350 7.350 |
O O |
K TL |
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5avs | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.2 | 0.0 | 0.0 | 0.0 |
TL |
7.350 |
O |
TL |
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5avt | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.3 | 0.0 | 0.0 | 0.0 |
TL |
7.350 |
O |
TL |
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5avu | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.2 | 0.0 | 0.0 | 0.0 |
TL |
7.351 |
O |
TL |
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5avv | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.3 | 0.0 | 0.0 | 0.0 |
TL |
7.350 |
O |
TL |
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5avw | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.7 | -44.2 | 0.0 | 0.0 | 0.0 |
TL |
7.351 |
O |
TL |
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5avx | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.2 | 0.0 | 0.0 | 0.0 |
TL |
7.350 |
O |
TL |
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5avy | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.7 | -44.2 | 0.0 | 0.0 | 0.0 |
TL |
7.350 |
O |
TL |
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5avz | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.3 | 0.0 | 0.0 | 0.0 |
TL |
7.350 |
O |
TL |
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5aw0 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.3 | 0.0 | 0.0 | 0.0 |
TL |
7.351 |
O |
TL |
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5aw1 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.7 | -44.2 | 0.0 | 0.0 | 0.0 |
TL |
7.351 |
O |
TL |
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5aw2 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.7 | -44.2 | 0.0 | 0.0 | 0.0 |
TL |
7.351 |
O |
TL |
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5aw3 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.3 | 0.0 | 0.0 | 0.0 |
TL |
7.350 |
O |
TL |
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5aw4 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.4 | 0.0 | 0.0 | 0.0 |
K RB |
7.352 7.352 |
O O |
K RB |
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5aw5 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.2 | 0.0 | 0.0 | 0.0 |
K RB |
7.351 7.351 |
O O |
K RB |
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5aw6 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.3 | 0.0 | 0.0 | 0.0 |
K RB |
7.348 7.348 |
O O |
K RB |
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5aw7 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.3 | 0.0 | 0.0 | 0.0 |
RB |
7.351 |
O |
RB |
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5aw8 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -60.6 | -44.2 | 0.0 | 0.0 | 0.0 |
RB |
7.350 |
O |
RB |
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5aw9 | 1 | Q4H132 | 85.56 | 0.0 |
X-RAY |
2015-09-02 | GLY | A:331 | A:326 | 0.0 | 0.0 | H | -49.9 | -55.5 | 0.0 | 0.0 | 0.0 |
K HOH |
7.291 3.938 |
O N |
K O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p13637-f1 | 1 | P13637 | 100.0 | 0.0 | GLY | A:316 | A:316 | 5.0 | 0.067 | H | -57.6 | -42.4 | |
af-p50993-f1 | 1 | P50993 | 88.81 | 0.0 | GLY | A:324 | A:324 | 4.0 | 0.053 | H | -57.3 | -42.3 | |
af-p05023-f1 | 1 | P05023 | 88.03 | 0.0 | GLY | A:326 | A:326 | 8.0 | 0.107 | H | -57.7 | -42.5 |