Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 45419524 . G A CCDS12648.1:NM_001645.3:c.136Gac>Aac_NP_001636.1:p.46D>N Homo sapiens apolipoprotein C-I (APOC1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6dvu 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 ASP A:46 A:20 80.0 0.533 H -65.6 -39.6 80.0 0.533 0.0 HOH
 3.657
 N
 O
ASP B:46 B:20 59.0 0.393 H -65.4 -38.6 NA NA NA
6dxr 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 ASP A:46 A:20 77.0 0.513 H -70.0 -38.3 77.0 0.513 0.0 MPD
HOH
 4.501
7.594
 OD2
O
 O4
O
ASP B:46 B:20 54.0 0.36 H -79.9 -37.7 NA NA NA
6dz6 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 ASP A:46 A:20 84.0 0.56 H -74.4 -40.6 84.0 0.56 0.0 HOH
 6.710
 O
 O
ASP B:46 B:20 100.0 0.667 H -73.9 -40.7 100.0 0.667 0.0
6nf3 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 ASP A:46 A:20 71.0 0.473 H -71.4 -41.7 71.0 0.473 0.0 HOH
 3.820
 CB
 O
ASP B:46 B:20 69.0 0.46 H -61.5 -52.0 NA NA NA
1ioj 1 P02654 100.0 7e-35 NMR
 1998-08-12 ASP A:20 A:20 106.0 0.707 H -59.6 -42.6 106.0 0.707 0.0
1opp 1 P02654 100.0 3e-20 NMR
 1998-05-13 ASP A:20 A:20 55.0 0.367 T -110.9 -20.0 55.0 0.367 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02654-f1 1 P02654 100.0 7e-55 ASP A:46 A:46 107.0 0.713 H -64.6 -47.9