Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 45419555 . A C CCDS12648.1:NM_001645.3:c.167aAa>aCa_NP_001636.1:p.56K>T Homo sapiens apolipoprotein C-I (APOC1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6dvu 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 LYS A:56 A:30 118.0 0.59 H -69.4 -33.7 89.0 0.445 0.145 B:P02654:0.145
 HOH
 4.542
 O
 O
LYS B:56 B:30 133.0 0.665 H -66.7 -30.9 NA NA NA
6dxr 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 LYS A:56 A:30 132.0 0.66 H -59.1 -43.7 115.0 0.575 0.085 B:P02654:0.085
 MPD
HOH
 9.725
4.595
 O
NZ
 CM
O
LYS B:56 B:30 127.0 0.635 H -68.2 -35.0 NA NA NA
6dz6 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 LYS A:56 A:30 128.0 0.64 H -46.2 -39.0 128.0 0.64 0.0 HOH
 9.670
 C
 O
LYS B:56 B:30 137.0 0.685 H -46.6 -39.7 137.0 0.685 0.0 HOH
 9.216
 N
 O
6nf3 1 P02654 100.0 2e-54 X-RAY
 2018-12-26 LYS A:56 A:30 130.0 0.65 H -56.4 -33.8 114.0 0.57 0.08 B:P02654:0.08
 HOH
 3.414
 CG
 O
LYS B:56 B:30 128.0 0.64 H -62.1 -36.0 NA NA NA
1ioj 1 P02654 100.0 7e-35 NMR
 1998-08-12 LYS A:30 A:30 152.0 0.76 S 59.7 66.4 152.0 0.76 0.0
1opp 1 P02654 100.0 3e-20 NMR
 1998-05-13 LYS A:30 A:30 148.0 0.74 H -67.8 -32.5 148.0 0.74 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p02654-f1 1 P02654 100.0 7e-55 LYS A:56 A:56 169.0 0.845 H -69.3 -34.9