Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 47349359 | . | C | A | CCDS12693.1:NM_021575.2:c.44cGc>cTc_NP_067586.1:p.15R>L | Homo sapiens adaptor-related protein complex 2, sigma 1 subunit (AP2S1), transcript variant AP17, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2jkr | 3 | P62743 | 100.0 | 1e-102 |
X-RAY |
2008-10-28 | ARG | D:15 | I:15 | 67.0 | 0.298 | E | -127.1 | 0.7 | NA | NA | NA | ||||||
ARG | I:15 | S:15 | 65.0 | 0.289 | E | -129.7 | 2.6 | 28.0 | 0.124 | 0.165 |
A:P17427:0.16 G:B0AZV7:0.067 |
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2jkt | 3 | P62743 | 100.0 | 1e-102 |
X-RAY |
2008-10-28 | ARG | D:15 | I:15 | 73.0 | 0.324 | E | -132.6 | -8.1 | NA | NA | NA | ||||||
ARG | I:15 | S:15 | 73.0 | 0.324 | E | -139.0 | -5.5 | 33.0 | 0.147 | 0.177 |
A:P17427:0.156 G:B0AZV7:0.062 |
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2vgl | 4 | P62743 | 100.0 | 1e-102 |
X-RAY |
2007-12-25 | ARG | D:15 | S:15 | 54.0 | 0.24 | E | -114.5 | -14.7 | 44.0 | 0.196 | 0.044 |
B:P63010:0.013 A:Q66HM2:0.031 |
HOH |
7.831 |
NE |
O |
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2xa7 | 5 | P62743 | 100.0 | 1e-102 |
X-RAY |
2010-07-21 | ARG | E:15 | S:15 | 71.0 | 0.316 | E | -71.5 | -18.3 | 52.0 | 0.231 | 0.085 |
A:Q66HM2:0.084 |
SO4 |
3.547 |
NH2 |
O1 |
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4nee | 1 | P62744 | 100.0 | 1e-102 |
X-RAY |
2014-01-29 | ARG | A:15 | D:15 | 66.0 | 0.293 | E | -78.9 | -34.8 | 49.0 | 0.218 | 0.075 |
F:Q66HM2:0.062 L:Q90VU7:0.062 |
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ARG | B:15 | L:15 | 56.0 | 0.249 | E | -78.9 | -36.9 | NA | NA | NA | |||||||||||||
ARG | C:15 | F:15 | 51.0 | 0.227 | E | -82.0 | -34.2 | NA | NA | NA | |||||||||||||
ARG | D:15 | I:15 | 62.0 | 0.276 | E | -79.4 | -34.7 | NA | NA | NA | |||||||||||||
4uqi | 4 | P62743 | 100.0 | 1e-102 |
X-RAY |
2014-07-30 | ARG | D:15 | S:15 | 59.0 | 0.262 | E | -119.7 | -9.1 | 51.0 | 0.227 | 0.035 |
B:P63010:0.009 A:P18484:0.027 |
HOH |
7.959 |
NE |
O |
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6owo | 4 | P62744 | 100.0 | 1e-102 |
EM |
2019-09-11 | ARG | D:15 | S:15 | 47.0 | 0.209 | E | -120.8 | -16.8 | 38.0 | 0.169 | 0.04 |
B:Q9DBG3:0.009 A:None:0.031 |
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6oxl | 4 | P62744 | 100.0 | 1e-102 |
EM |
2019-09-11 | ARG | D:15 | S:15 | 54.0 | 0.24 | E | -113.6 | -51.6 | 41.0 | 0.182 | 0.058 |
B:Q9DBG3:0.031 A:None:0.031 |
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6qh5 | 5 | P62743 | 100.0 | 1e-102 |
X-RAY |
2019-09-04 | ARG | E:15 | S:15 | 31.0 | 0.138 | E | -110.1 | -17.6 | 21.0 | 0.093 | 0.045 |
A:Q66HM2:0.036 B:P63010:0.013 |
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6qh6 | 7 | P62743 | 100.0 | 1e-102 |
X-RAY |
2019-09-04 | ARG | G:15 | S:15 | 69.0 | 0.307 | E | -71.2 | -15.6 | 40.0 | 0.178 | 0.129 |
A:Q66HM2:0.116 F:None:0.018 |
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6qh7 | 6 | P62743 | 100.0 | 1e-102 |
X-RAY |
2019-09-04 | ARG | G:15 | S:15 | 72.0 | 0.32 | E | -73.4 | -6.5 | 41.0 | 0.182 | 0.138 |
A:Q66HM2:0.12 F:None:0.022 |
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6yae | 4 | P62743 | 100.0 | 1e-102 |
EM |
2020-07-29 | ARG | D:15 | S:15 | 69.0 | 0.307 | E | -78.2 | -28.2 | 43.0 | 0.191 | 0.116 |
B:P63010:0.058 A:Q66HM2:0.084 |
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6yaf | 5 | P62743 | 100.0 | 1e-102 |
EM |
2020-07-29 | ARG | E:15 | S:15 | 123.0 | 0.547 | S | -80.1 | -13.6 | 96.0 | 0.427 | 0.12 |
A:P18484:0.12 |
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6yah | 4 | P62743 | 100.0 | 1e-102 |
EM |
2020-07-29 | ARG | D:15 | S:15 | 125.0 | 0.556 | S | -80.0 | -13.6 | 98.0 | 0.436 | 0.12 |
A:P18484:0.12 |
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6uri | 2 | P53680 | 99.3 | 4e-102 |
X-RAY |
2020-07-29 | ARG | B:15 | S:15 | 62.0 | 0.276 | E | -86.9 | -21.7 | 41.0 | 0.182 | 0.094 |
A:Q66HM2:0.067 C:Q90VU7:0.071 |
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6owt | 5 | P62744 | 98.59 | 6e-100 |
EM |
2019-09-25 | ARG | F:15 | S:15 | 85.0 | 0.378 | E | -93.1 | -43.0 | 73.0 | 0.324 | 0.054 |
A:Q66HM2:0.053 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p53680-f1 | 1 | P53680 | 100.0 | 6e-103 | ARG | A:15 | A:15 | 65.0 | 0.289 | E | -104.1 | -28.2 |