Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 49300496 | . | C | A | CCDS12735.1:NM_001190.3:c.790Gag>Tag_NP_001181.2:p.264E>* | Homo sapiens branched chain amino acid transaminase 2 (BCAT2), transcript variant a, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5bwr | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | GLU | A:241 | A:237 | 5.0 | 0.026 | E | -149.7 | 161.2 | 5.0 | 0.026 | 0.0 |
PLP 4VT CL HOH |
2.661 8.596 9.486 3.857 |
OE1 OE1 OE2 CG |
N1 C8 CL O |
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GLU | B:241 | B:237 | 6.0 | 0.032 | E | -149.7 | 162.1 | 6.0 | 0.032 | 0.0 |
PLP 4VT CL HOH |
2.564 8.500 9.286 4.006 |
OE1 OE1 OE2 CG |
N1 C8 CL O |
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5bwt | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | GLU | A:241 | A:237 | 5.0 | 0.026 | E | -144.3 | 158.1 | 5.0 | 0.026 | 0.0 |
PLP 4VS CL HOH |
2.386 8.958 9.424 4.100 |
OE1 OE1 OE2 CG |
N1 N3 CL O |
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GLU | B:241 | B:237 | 5.0 | 0.026 | E | -152.3 | 157.8 | 5.0 | 0.026 | 0.0 |
PLP 4VS CL HOH |
2.442 9.043 9.380 3.961 |
OE1 OE1 OE2 CG |
N1 N3 CL O |
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5bwu | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -148.6 | 164.7 | 6.0 | 0.032 | 0.0 |
PLP 4VR EDO HOH |
2.445 7.122 9.106 3.859 |
OE1 C OE2 CG |
N1 C15 C1 O |
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GLU | B:241 | B:237 | 5.0 | 0.026 | E | -146.4 | 164.0 | 5.0 | 0.026 | 0.0 |
PLP 4VR EDO HOH |
2.452 7.051 8.855 4.144 |
OE1 C OE2 CG |
N1 C15 C1 O |
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5bwv | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -147.1 | 166.2 | 6.0 | 0.032 | 0.0 |
PLP 775 CL EDO HOH |
2.425 6.921 9.344 9.785 3.816 |
OE1 C OE2 OE1 CG |
N1 C18 CL O1 O |
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GLU | B:241 | B:237 | 6.0 | 0.032 | E | -144.1 | 166.7 | 6.0 | 0.032 | 0.0 |
EDO PLP 775 CL HOH |
9.506 2.373 6.917 9.270 4.145 |
OE1 OE1 C OE2 CG |
O1 N1 C18 CL O |
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5bww | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | GLU | A:241 | A:237 | 5.0 | 0.026 | E | -150.5 | 161.4 | 5.0 | 0.026 | 0.0 |
PLP 4W6 EDO HOH |
2.386 7.262 9.088 4.013 |
OE1 C OE2 CG |
N1 C15 C1 O |
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GLU | B:241 | B:237 | 6.0 | 0.032 | E | -149.2 | 162.4 | 6.0 | 0.032 | 0.0 |
PLP 4W6 EDO HOH |
2.461 7.401 9.159 3.950 |
OE1 C OE2 CG |
N1 C15 C2 O |
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5bwx | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -150.6 | 170.0 | 6.0 | 0.032 | 0.0 |
PLP 4W4 CL HOH |
2.412 7.126 9.518 3.665 |
OE1 C OE2 CG |
N1 C19 CL O |
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GLU | B:241 | B:237 | 8.0 | 0.042 | E | -146.7 | 166.8 | 8.0 | 0.042 | 0.0 |
PLP 4W4 CL HOH |
2.331 7.184 9.358 3.676 |
OE1 C OE2 CG |
N1 C19 CL O |
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5cr5 | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-08-12 | GLU | A:241 | A:237 | 7.0 | 0.037 | E | -150.1 | 172.5 | 7.0 | 0.037 | 0.0 |
PLP EL1 HOH |
2.461 7.053 3.618 |
OE1 C CG |
N1 S40 O |
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GLU | B:241 | B:237 | 8.0 | 0.042 | E | -145.0 | 168.8 | 8.0 | 0.042 | 0.0 |
PLP EL1 HOH |
2.367 7.070 3.657 |
OE1 C CG |
N1 S40 O |
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5hne | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-05-04 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -147.1 | 167.2 | 6.0 | 0.032 | 0.0 |
PLP EL2 HOH |
2.295 7.081 4.027 |
OE1 C CG |
N1 S O |
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GLU | B:241 | B:237 | 5.0 | 0.026 | E | -151.1 | 163.6 | 5.0 | 0.026 | 0.0 |
PLP EL2 HOH |
2.391 7.063 3.944 |
OE1 C CG |
N1 S O |
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5i5s | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 5.0 | 0.026 | E | -146.3 | 159.0 | 5.0 | 0.026 | 0.0 |
PLP NVU CL HOH |
2.443 7.708 9.470 4.132 |
OE1 OE1 OE2 CG |
N1 CA CL O |
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GLU | B:241 | B:237 | 4.0 | 0.021 | E | -150.3 | 160.0 | 4.0 | 0.021 | 0.0 |
PLP NVU CL HOH |
2.502 7.929 9.427 4.077 |
OE1 OE1 OE2 CG |
N1 O CL O |
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5i5t | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 5.0 | 0.026 | E | -148.4 | 161.2 | 5.0 | 0.026 | 0.0 |
PLP 67X CL HOH |
2.408 7.080 9.469 3.984 |
OE1 OE1 OE2 CG |
N1 N13 CL O |
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GLU | B:241 | B:237 | 6.0 | 0.032 | E | -147.6 | 161.9 | 6.0 | 0.032 | 0.0 |
PLP 67X CL HOH |
2.365 7.150 9.418 3.952 |
OE1 OE1 OE2 CG |
N1 N13 CL O |
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5i5u | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -149.2 | 162.6 | 6.0 | 0.032 | 0.0 |
PLP 67Y CL HOH |
2.476 7.760 9.483 3.906 |
OE1 OE1 OE2 CG |
N1 C2 CL O |
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GLU | B:241 | B:237 | 5.0 | 0.026 | E | -153.0 | 159.4 | 5.0 | 0.026 | 0.0 |
PLP 67Y CL HOH |
2.513 8.229 9.394 4.032 |
OE1 OE1 OE2 CG |
N1 C2 CL O |
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5i5v | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -147.4 | 163.3 | 6.0 | 0.032 | 0.0 |
PLP CL EDO EDO HOH |
2.343 9.523 8.746 7.431 3.989 |
OE1 OE2 OE1 OE1 CG |
N1 CL C1 O1 O |
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GLU | B:241 | B:237 | 6.0 | 0.032 | E | -151.6 | 161.5 | 6.0 | 0.032 | 0.0 |
EDO PLP CL EDO HOH |
8.782 2.382 9.530 7.709 4.021 |
OE1 OE1 OE2 OE1 CG |
O1 N1 CL O2 O |
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5i5w | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -150.6 | 159.6 | 6.0 | 0.032 | 0.0 |
68B PLP CL HOH |
8.647 2.401 9.460 3.960 |
OE1 OE1 OE2 CG |
C12 N1 CL O |
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GLU | B:241 | B:237 | 6.0 | 0.032 | E | -151.4 | 161.7 | 6.0 | 0.032 | 0.0 |
68B PLP CL HOH |
8.639 2.434 9.374 3.996 |
OE1 OE1 OE2 CG |
C12 N1 CL O |
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5i5x | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 9.0 | 0.047 | E | -149.7 | 163.0 | 9.0 | 0.047 | 0.0 |
HOH |
3.097 |
OE1 |
O |
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GLU | B:241 | B:237 | 9.0 | 0.047 | E | -150.3 | 160.5 | 9.0 | 0.047 | 0.0 |
CL HOH |
9.608 2.985 |
OE2 OE1 |
CL O |
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5i5y | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 7.0 | 0.037 | E | -146.0 | 160.9 | 7.0 | 0.037 | 0.0 |
PLP 68D CL HOH |
2.486 8.097 9.503 3.994 |
OE1 OE1 OE2 CG |
N1 C19 CL O |
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GLU | B:241 | B:237 | 6.0 | 0.032 | E | -142.5 | 162.0 | 6.0 | 0.032 | 0.0 |
PLP 68D CL HOH |
2.430 7.998 9.512 4.052 |
OE1 OE1 OE2 CG |
N1 C19 CL O |
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5i60 | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | GLU | A:241 | A:237 | 6.0 | 0.032 | E | -148.1 | 161.4 | 6.0 | 0.032 | 0.0 |
PLP 67W HOH |
2.400 8.004 4.092 |
OE1 OE1 CG |
N1 C3 O |
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GLU | B:241 | B:237 | 5.0 | 0.026 | E | -148.5 | 160.8 | 5.0 | 0.026 | 0.0 |
PLP 67W HOH |
2.543 8.169 4.132 |
OE1 OE1 CG |
N1 C3 O |
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1ekf | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2001-03-08 | GLU | A:237 | A:237 | 5.0 | 0.026 | E | -150.2 | 167.6 | 5.0 | 0.026 | 0.0 |
PLP HOH |
2.482 3.793 |
OE1 CG |
N1 O |
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GLU | B:237 | B:237 | 7.0 | 0.037 | E | -151.3 | 165.7 | 7.0 | 0.037 | 0.0 |
PLP HOH |
2.507 3.820 |
OE1 CG |
N1 O |
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1ekp | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2001-03-09 | GLU | A:237 | A:237 | 7.0 | 0.037 | E | -145.9 | 169.0 | 7.0 | 0.037 | 0.0 |
PLP HOH |
2.674 4.102 |
OE1 CG |
N1 O |
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GLU | B:237 | B:237 | 7.0 | 0.037 | E | -144.9 | 168.5 | 7.0 | 0.037 | 0.0 |
PLP HOH |
2.672 4.025 |
OE1 CG |
N1 O |
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1ekv | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2001-03-09 | GLU | A:237 | A:237 | 8.0 | 0.042 | B | -150.6 | 161.0 | 8.0 | 0.042 | 0.0 |
PLP TRS HOH |
2.392 7.492 3.701 |
OE1 OE1 CG |
N1 N O |
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GLU | B:237 | B:237 | 6.0 | 0.032 | B | -150.0 | 161.4 | 6.0 | 0.032 | 0.0 |
PLP TRS HOH |
2.448 7.532 2.707 |
OE1 OE1 OE2 |
N1 N O |
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1kt8 | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2002-11-20 | GLU | A:237 | A:237 | 2.0 | 0.011 | E | -149.6 | 162.4 | 2.0 | 0.011 | 0.0 |
ILP HOH |
2.859 2.604 |
OE1 OE2 |
N1 O |
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GLU | B:237 | B:737 | 0.0 | 0.0 | E | -152.6 | 163.5 | 0.0 | 0.0 | 0.0 |
ILP HOH |
2.830 3.848 |
OE1 OE2 |
N1 O |
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1kta | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2002-11-20 | GLU | A:237 | A:237 | 10.0 | 0.053 | E | -151.6 | 160.6 | 10.0 | 0.053 | 0.0 |
KIV PMP HOH |
8.998 2.822 2.618 |
OE1 OE1 OE2 |
O1 N1 O |
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GLU | B:237 | B:737 | 10.0 | 0.053 | E | -153.2 | 163.4 | 10.0 | 0.053 | 0.0 |
PMP HOH |
2.707 3.691 |
OE1 OE2 |
N1 O |
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2a1h | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2005-09-06 | GLU | A:237 | A:237 | 5.0 | 0.026 | E | -137.2 | 158.5 | 5.0 | 0.026 | 0.0 |
PLP GBN HOH |
3.034 8.351 3.864 |
OE1 OE1 OE1 |
N1 N1 O |
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GLU | B:237 | B:237 | 6.0 | 0.032 | E | -137.9 | 157.7 | 6.0 | 0.032 | 0.0 |
PLP GBN HOH |
3.085 8.318 3.877 |
OE1 OE1 CG |
N1 N1 O |
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2hhf | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2006-10-24 | GLU | A:237 | A:237 | 8.0 | 0.042 | E | -136.8 | 160.1 | 8.0 | 0.042 | 0.0 |
PLP HOH |
3.213 2.634 |
OE2 OE1 |
N1 O |
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2hhf | 2 | O15382 | 99.73 | 0.0 |
X-RAY |
2006-10-24 | GLU | B:237 | B:737 | 7.0 | 0.037 | E | -137.7 | 157.1 | 7.0 | 0.037 | 0.0 |
PLP EPE HOH |
2.954 9.812 3.847 |
OE2 OE2 CG |
N1 C8 O |
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5mpr | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2017-07-19 | GLU | A:238 | A:237 | 6.0 | 0.032 | E | -155.7 | 158.8 | 6.0 | 0.032 | 0.0 |
PLP EDO HOH |
2.399 8.686 3.875 |
OE1 OE1 CG |
N1 O2 O |
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2hg8 | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2006-10-24 | GLU | A:237 | A:237 | 6.0 | 0.032 | E | -136.9 | 160.1 | 6.0 | 0.032 | 0.0 |
PLP HOH |
3.476 3.392 |
OE1 OE1 |
N1 O |
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GLU | B:237 | B:737 | 6.0 | 0.032 | E | -138.5 | 159.1 | 6.0 | 0.032 | 0.0 |
MLE PLP HOH |
9.230 3.384 3.502 |
OE2 OE1 OE1 |
CD2 N1 O |
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2hgx | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2006-10-24 | GLU | A:237 | A:237 | 8.0 | 0.042 | E | -137.3 | 161.4 | 8.0 | 0.042 | 0.0 |
PLP HOH |
3.268 2.662 |
OE2 OE1 |
N1 O |
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GLU | B:237 | B:737 | 6.0 | 0.032 | E | -135.1 | 160.2 | 6.0 | 0.032 | 0.0 |
PLP HOH |
3.226 3.674 |
OE1 OE1 |
N1 O |
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2hgw | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2006-10-24 | GLU | A:237 | A:237 | 6.0 | 0.032 | E | -135.0 | 160.3 | 6.0 | 0.032 | 0.0 |
PLP ACY ACY HOH |
2.957 7.445 8.174 3.780 |
OE1 OE1 O CG |
N1 OXT CH3 O |
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GLU | B:237 | B:737 | 8.0 | 0.042 | E | -139.5 | 162.1 | 8.0 | 0.042 | 0.0 |
SO4 PLP HOH |
8.395 3.232 2.684 |
OE2 OE2 OE1 |
O2 N1 O |
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6prx | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2020-01-22 | GLU | A:255 | A:237 | 7.0 | 0.037 | E | -141.3 | 165.4 | 7.0 | 0.037 | 0.0 |
PLP |
3.133 |
OE1 |
C2A |
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GLU | B:255 | B:237 | 7.0 | 0.037 | E | -141.1 | 165.0 | 7.0 | 0.037 | 0.0 |
PLP |
3.058 |
OE1 |
N1 |
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2hdk | 1 | O15382 | 99.18 | 0.0 |
X-RAY |
2006-10-24 | GLU | A:237 | A:237 | 7.0 | 0.037 | E | -141.2 | 159.1 | 7.0 | 0.037 | 0.0 |
PLP ACY HOH |
2.630 8.498 4.204 |
OE1 OE1 CG |
N1 OXT O |
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GLU | B:237 | B:737 | 5.0 | 0.026 | E | -138.7 | 156.8 | 5.0 | 0.026 | 0.0 |
PLP COI HOH |
2.647 7.964 4.232 |
OE1 OE1 CA |
N1 O2 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-o15382-f1 | 1 | O15382 | 100.0 | 0.0 | GLU | A:264 | A:264 | 6.0 | 0.032 | E | -141.3 | 162.1 |