Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 49303260 | . | C | A | CCDS12735.1:NM_001190.3:c.509cGg>cTg_NP_001181.2:p.170R>L | Homo sapiens branched chain amino acid transaminase 2 (BCAT2), transcript variant a, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5bwr | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | ARG | A:147 | A:143 | 71.0 | 0.316 | E | -122.4 | 88.7 | 6.0 | 0.027 | 0.289 |
B:O15382:0.289 |
PLP 4VT HOH |
7.593 4.024 4.922 |
NH2 NH2 NH2 |
C4A C11 O |
|
ARG | B:147 | B:143 | 66.0 | 0.293 | E | -123.9 | 87.3 | 3.0 | 0.013 | 0.28 |
A:O15382:0.28 |
PLP 4VT EDO HOH |
7.569 4.231 8.928 4.947 |
NH2 NH2 NH2 NH2 |
C4A C6 O2 O |
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5bwt | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | ARG | A:147 | A:143 | 71.0 | 0.316 | E | -122.9 | 88.9 | 2.0 | 0.009 | 0.307 |
B:O15382:0.307 |
PLP 4VS HOH |
7.514 3.647 4.665 |
NH2 NH2 NH2 |
C4A C2 O |
|
ARG | B:147 | B:143 | 70.0 | 0.311 | E | -118.3 | 89.7 | 2.0 | 0.009 | 0.302 |
A:O15382:0.302 |
PLP 4VS HOH |
7.724 3.758 4.839 |
NH2 NH2 NH2 |
C4A C2 O |
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5bwu | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | ARG | A:147 | A:143 | 68.0 | 0.302 | E | -119.5 | 89.3 | 2.0 | 0.009 | 0.293 |
B:O15382:0.293 |
PLP 4VR EDO HOH |
7.307 3.440 8.716 4.896 |
NH2 NH2 NH2 NH2 |
C4A C3 O2 O |
|
ARG | B:147 | B:143 | 68.0 | 0.302 | E | -128.8 | 89.4 | 3.0 | 0.013 | 0.289 |
A:O15382:0.289 |
PLP 4VR EDO HOH |
7.465 3.678 9.289 4.838 |
NH2 NH2 NH2 NH2 |
C4A C3 C2 O |
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5bwv | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | ARG | A:147 | A:143 | 69.0 | 0.307 | E | -122.2 | 88.9 | 4.0 | 0.018 | 0.289 |
B:O15382:0.289 |
PLP 775 HOH |
7.399 3.519 4.747 |
NH2 NH2 NH2 |
C4A C3 O |
|
ARG | B:147 | B:143 | 70.0 | 0.311 | E | -122.3 | 89.2 | 3.0 | 0.013 | 0.298 |
A:O15382:0.298 |
PLP 775 HOH |
7.458 3.604 4.694 |
NH2 NH2 NH2 |
C4A C3 O |
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5bww | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | ARG | A:147 | A:143 | 67.0 | 0.298 | E | -119.1 | 88.8 | 4.0 | 0.018 | 0.28 |
B:O15382:0.28 |
PLP 4W6 EDO HOH |
7.264 3.547 8.966 4.814 |
NH2 NH2 NH2 NH2 |
C4A C3 C2 O |
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ARG | B:147 | B:143 | 65.0 | 0.289 | E | -121.9 | 94.0 | 3.0 | 0.013 | 0.276 |
A:O15382:0.276 |
PLP 4W6 EDO HOH |
7.309 3.677 9.355 4.918 |
NH2 NH2 NH2 NH2 |
C4A C3 C2 O |
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5bwx | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-07-01 | ARG | A:147 | A:143 | 69.0 | 0.307 | E | -120.5 | 90.0 | 4.0 | 0.018 | 0.289 |
B:O15382:0.289 |
PLP 4W4 EDO HOH |
7.299 3.542 9.334 4.650 |
NH2 NH2 NH2 NH2 |
C4A C3 O2 O |
|
ARG | B:147 | B:143 | 70.0 | 0.311 | E | -123.9 | 86.4 | 4.0 | 0.018 | 0.293 |
A:O15382:0.293 |
PLP 4W4 EDO HOH |
7.454 3.509 9.149 4.749 |
NH2 NH2 NH2 NH2 |
C4A C3 C2 O |
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5cr5 | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2015-08-12 | ARG | A:147 | A:143 | 69.0 | 0.307 | E | -124.3 | 87.5 | 3.0 | 0.013 | 0.294 |
B:O15382:0.293 |
PLP EL1 HOH |
7.720 3.602 4.711 |
NH2 NH2 NH2 |
C4A C44 O |
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ARG | B:147 | B:143 | 70.0 | 0.311 | E | -121.9 | 90.5 | 3.0 | 0.013 | 0.298 |
A:O15382:0.298 |
PLP EL1 HOH |
7.760 3.609 4.663 |
NH2 NH2 NH2 |
C4A C44 O |
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5hne | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-05-04 | ARG | A:147 | A:143 | 65.0 | 0.289 | E | -120.6 | 86.4 | 4.0 | 0.018 | 0.271 |
B:O15382:0.271 |
PLP EL2 HOH |
7.611 4.399 4.696 |
NH2 NH2 NH2 |
C4A C22 O |
|
ARG | B:147 | B:143 | 65.0 | 0.289 | E | -127.9 | 94.0 | 2.0 | 0.009 | 0.28 |
A:O15382:0.28 |
PLP EL2 HOH |
7.641 4.499 4.866 |
NH2 NH2 NH2 |
C4A C22 O |
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5i5s | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 71.0 | 0.316 | E | -118.0 | 88.5 | 4.0 | 0.018 | 0.298 |
B:O15382:0.298 |
PLP NVU HOH |
7.452 3.772 4.816 |
NH2 NH2 NH2 |
C4A CE2 O |
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ARG | B:147 | B:143 | 70.0 | 0.311 | E | -120.1 | 91.6 | 4.0 | 0.018 | 0.293 |
A:O15382:0.293 |
PLP NVU HOH |
7.480 3.783 4.824 |
NH2 NH2 NH2 |
C4A CE2 O |
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5i5t | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 71.0 | 0.316 | E | -114.3 | 88.9 | 3.0 | 0.013 | 0.303 |
B:O15382:0.302 |
PLP 67X HOH |
7.401 3.992 4.553 |
NH2 NH2 NH2 |
C4A C7 O |
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ARG | B:147 | B:143 | 71.0 | 0.316 | E | -122.0 | 88.1 | 4.0 | 0.018 | 0.298 |
A:O15382:0.298 |
PLP 67X HOH |
7.463 4.312 4.793 |
NH2 NH2 NH2 |
C4A C8 O |
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5i5u | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 69.0 | 0.307 | E | -117.8 | 88.4 | 4.0 | 0.018 | 0.289 |
B:O15382:0.289 |
PLP 67Y HOH |
7.242 4.280 4.834 |
NH2 NH2 NH2 |
C4A C8 O |
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ARG | B:147 | B:143 | 69.0 | 0.307 | E | -118.6 | 86.2 | 4.0 | 0.018 | 0.289 |
A:O15382:0.289 |
PLP 67Y HOH |
7.338 4.523 4.666 |
NH2 NH2 NH2 |
C4A C10 O |
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5i5v | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 70.0 | 0.311 | E | -121.8 | 88.8 | 6.0 | 0.027 | 0.284 |
B:O15382:0.284 |
PLP 68A EDO EDO HOH |
7.499 4.961 3.282 7.073 4.731 |
NH2 NH2 NH2 NH2 NH2 |
C4A O15 O2 O1 O |
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ARG | B:147 | B:143 | 69.0 | 0.307 | E | -124.3 | 91.1 | 4.0 | 0.018 | 0.289 |
A:O15382:0.289 |
EDO PLP 68A EDO HOH |
3.275 7.587 4.758 7.051 4.634 |
NH2 NH2 NH2 NH2 NH2 |
O2 C4A O14 O2 O |
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5i5w | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 65.0 | 0.289 | E | -118.5 | 85.3 | 4.0 | 0.018 | 0.271 |
B:O15382:0.271 |
68B PLP CL HOH |
3.800 7.317 7.277 4.713 |
NH2 NH2 NH2 NH2 |
C14 C4A CL O |
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ARG | B:147 | B:143 | 67.0 | 0.298 | E | -121.8 | 90.1 | 4.0 | 0.018 | 0.28 |
A:O15382:0.28 |
CL 68B PLP HOH |
7.150 3.931 7.542 4.871 |
NH2 NH2 NH2 NH1 |
CL C15 C4A O |
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5i5x | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 68.0 | 0.302 | E | -122.2 | 88.4 | 5.0 | 0.022 | 0.28 |
B:O15382:0.28 |
PMP 68C HOH |
7.431 4.079 4.648 |
NH2 NH2 NH2 |
N4A N16 O |
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ARG | B:147 | B:143 | 72.0 | 0.32 | E | -119.2 | 90.2 | 5.0 | 0.022 | 0.298 |
A:O15382:0.298 |
PMP 68C HOH |
7.595 4.178 4.738 |
NH2 NH2 NH2 |
N4A C15 O |
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5i5y | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 72.0 | 0.32 | E | -122.6 | 89.2 | 4.0 | 0.018 | 0.302 |
B:O15382:0.302 |
PLP 68D HOH |
7.455 3.747 4.465 |
NH2 NH2 NH2 |
C4A C16 O |
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ARG | B:147 | B:143 | 70.0 | 0.311 | E | -119.7 | 89.5 | 4.0 | 0.018 | 0.293 |
A:O15382:0.293 |
PLP 68D HOH |
7.505 3.773 4.477 |
NH2 NH2 NH2 |
C4A C16 O |
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5i60 | 1 | O15382 | 100.0 | 0.0 |
X-RAY |
2016-03-23 | ARG | A:147 | A:143 | 67.0 | 0.298 | E | -123.5 | 84.3 | 4.0 | 0.018 | 0.28 |
B:O15382:0.28 |
PLP 67W HOH |
7.410 3.850 4.838 |
NH2 NH2 NH2 |
C4A C6 O |
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ARG | B:147 | B:143 | 65.0 | 0.289 | E | -126.9 | 91.9 | 3.0 | 0.013 | 0.276 |
A:O15382:0.276 |
PLP 67W HOH |
7.352 3.879 4.669 |
NH2 NH2 NH2 |
C4A C6 O |
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1ekf | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2001-03-08 | ARG | A:143 | A:143 | 68.0 | 0.302 | E | -124.3 | 88.5 | 4.0 | 0.018 | 0.284 |
B:O15382:0.284 |
PLP HOH |
7.366 4.312 |
NH2 NH2 |
C4A O |
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ARG | B:143 | B:143 | 69.0 | 0.307 | E | -122.9 | 89.5 | 4.0 | 0.018 | 0.289 |
A:O15382:0.289 |
PLP HOH |
7.348 4.497 |
NH2 NH2 |
C4A O |
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1ekp | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2001-03-09 | ARG | A:143 | A:143 | 72.0 | 0.32 | E | -120.5 | 92.8 | 3.0 | 0.013 | 0.307 |
B:O15382:0.307 |
PLP HOH |
7.529 4.198 |
NH1 NH1 |
C4A O |
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ARG | B:143 | B:143 | 72.0 | 0.32 | E | -122.6 | 94.2 | 3.0 | 0.013 | 0.307 |
A:O15382:0.307 |
PLP HOH |
7.566 4.188 |
NH1 NH1 |
C4A O |
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1ekv | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2001-03-09 | ARG | A:143 | A:143 | 67.0 | 0.298 | E | -112.6 | 87.6 | 3.0 | 0.013 | 0.285 |
B:O15382:0.284 |
PLP TRS HOH |
8.129 4.901 6.549 |
NH1 NH1 NH2 |
C4A O3 O |
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ARG | B:143 | B:143 | 66.0 | 0.293 | E | -111.8 | 87.9 | 3.0 | 0.013 | 0.28 |
A:O15382:0.28 |
PLP TRS HOH |
7.982 5.401 3.215 |
NH1 NH1 NH2 |
C4A C O |
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1kt8 | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2002-11-20 | ARG | A:143 | A:143 | 61.0 | 0.271 | E | -125.7 | 88.8 | 0.0 | 0.0 | 0.271 |
B:O15382:0.258 |
ILP HOH |
4.537 5.081 |
NH2 NH1 |
CB O |
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ARG | B:143 | B:643 | 53.0 | 0.236 | E | -121.8 | 91.4 | 0.0 | 0.0 | 0.236 |
A:O15382:0.218 |
ILP HOH |
3.056 4.661 |
NH2 NH1 |
CG1 O |
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1kta | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2002-11-20 | ARG | A:143 | A:143 | 70.0 | 0.311 | E | -123.9 | 90.0 | 4.0 | 0.018 | 0.293 |
B:O15382:0.293 |
KIV PMP HOH |
4.111 7.155 4.893 |
NH2 NH2 NH2 |
O3 N4A O |
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ARG | B:143 | B:643 | 69.0 | 0.307 | E | -124.7 | 93.4 | 5.0 | 0.022 | 0.285 |
A:O15382:0.284 |
PMP HOH |
7.400 4.070 |
NH2 NH2 |
N4A O |
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2a1h | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2005-09-06 | ARG | A:143 | A:143 | 69.0 | 0.307 | E | -121.9 | 87.7 | 3.0 | 0.013 | 0.294 |
B:O15382:0.293 |
PLP GBN HOH |
7.454 3.592 4.959 |
NH2 NH2 NH2 |
C4A C5R O |
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ARG | B:143 | B:143 | 68.0 | 0.302 | E | -122.7 | 90.8 | 3.0 | 0.013 | 0.289 |
A:O15382:0.289 |
PLP GBN HOH |
7.414 3.575 4.975 |
NH2 NH2 NH2 |
C4A C4R O |
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2hhf | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2006-10-24 | ARG | A:143 | A:143 | 75.0 | 0.333 | E | -122.2 | 88.7 | 2.0 | 0.009 | 0.324 |
B:O15382:0.324 |
PLP HOH |
7.517 4.935 |
NH2 NH1 |
C4A O |
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2hhf | 2 | O15382 | 99.73 | 0.0 |
X-RAY |
2006-10-24 | ARG | B:143 | B:643 | 73.0 | 0.324 | E | -123.6 | 90.7 | 4.0 | 0.018 | 0.306 |
A:O15382:0.307 |
PLP EPE HOH |
7.549 3.721 6.693 |
NH2 NH2 NH1 |
C4A O8 O |
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5mpr | 1 | O15382 | 99.73 | 0.0 |
X-RAY |
2017-07-19 | ARG | A:144 | A:143 | 68.0 | 0.302 | E | -123.5 | 87.8 | 3.0 | 0.013 | 0.289 |
A:O15382:0.289 |
PLP EDO HOH |
7.651 3.338 4.677 |
NH2 NH2 NH2 |
C4A O1 O |
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2hg8 | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2006-10-24 | ARG | A:143 | A:143 | 67.0 | 0.298 | E | -120.7 | 89.2 | 3.0 | 0.013 | 0.285 |
B:O15382:0.284 |
PLP HOH |
7.314 4.753 |
NH2 NH2 |
C4A O |
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ARG | B:143 | B:643 | 67.0 | 0.298 | E | -121.7 | 88.3 | 0.0 | 0.0 | 0.298 |
A:O15382:0.276 E:None:0.084 |
MLE PLP HOH |
2.781 7.641 4.812 |
NH2 NH2 NH2 |
O C4A O |
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2hgx | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2006-10-24 | ARG | A:143 | A:143 | 69.0 | 0.307 | E | -121.9 | 89.4 | 4.0 | 0.018 | 0.289 |
B:O15382:0.289 |
PLP ACY HOH |
7.402 3.962 4.744 |
NH2 NH2 NH2 |
C4A OXT O |
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ARG | B:143 | B:643 | 68.0 | 0.302 | E | -122.8 | 91.2 | 3.0 | 0.013 | 0.289 |
A:O15382:0.289 |
PLP ACY HOH |
7.395 3.296 4.683 |
NH2 NH2 NH2 |
C4A O O |
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2hgw | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2006-10-24 | ARG | A:143 | A:143 | 65.0 | 0.289 | E | -121.0 | 89.4 | 4.0 | 0.018 | 0.271 |
B:O15382:0.271 |
PLP ACY ACY HOH |
7.424 6.611 3.759 4.983 |
NH2 NH2 NH2 NH2 |
C4A O CH3 O |
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ARG | B:143 | B:643 | 69.0 | 0.307 | E | -120.7 | 88.6 | 4.0 | 0.018 | 0.289 |
A:O15382:0.289 |
SO4 PLP HOH |
6.616 7.437 4.880 |
NH2 NH2 NH2 |
O1 C4A O |
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6prx | 1 | O15382 | 99.45 | 0.0 |
X-RAY |
2020-01-22 | ARG | A:161 | A:143 | 68.0 | 0.302 | E | -128.0 | 79.8 | 5.0 | 0.022 | 0.28 |
B:O15382:0.28 |
PLP |
6.884 |
NH2 |
C4A |
|
ARG | B:161 | B:143 | 65.0 | 0.289 | E | -128.3 | 79.9 | 4.0 | 0.018 | 0.271 |
A:O15382:0.271 |
PLP |
7.058 |
NH2 |
C4A |
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2hdk | 1 | O15382 | 99.18 | 0.0 |
X-RAY |
2006-10-24 | ARG | A:143 | A:143 | 70.0 | 0.311 | E | -121.1 | 91.0 | 4.0 | 0.018 | 0.293 |
B:O15382:0.293 |
PLP ACY HOH |
7.604 4.628 6.632 |
NH2 NH2 NH1 |
C4A O O |
|
ARG | B:143 | B:643 | 71.0 | 0.316 | E | -119.7 | 92.9 | 4.0 | 0.018 | 0.298 |
A:O15382:0.298 |
PLP COI HOH |
7.459 3.234 5.165 |
NH2 NH2 NH2 |
C4A C5 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-o15382-f1 | 1 | O15382 | 100.0 | 0.0 | ARG | A:170 | A:170 | 65.0 | 0.289 | E | -120.6 | 83.8 |