Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 52725370 | . | G | A | CCDS12849.1:NM_014225.5:c.1537Ggg>Agg_NP_055040.2:p.513G>R | Homo sapiens protein phosphatase 2 scaffold subunit Aalpha (PPP2R1A), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2ie3 | 1 | Q96DH3 | 100.0 | 0.0 |
X-RAY |
2006-11-07 | GLY | A:513 | A:513 | 19.0 | 0.253 | H | 80.0 | 150.3 | 19.0 | 0.253 | 0.0 | ||||||
2ie4 | 1 | Q96DH3 | 100.0 | 0.0 |
X-RAY |
2006-11-07 | GLY | A:513 | A:513 | 21.0 | 0.28 | H | 84.1 | 160.1 | 21.0 | 0.28 | 0.0 | ||||||
2npp | 1 | Q96DH3 | 100.0 | 0.0 |
X-RAY |
2006-12-12 | GLY | A:513 | A:513 | 24.0 | 0.32 | H | 80.5 | 148.9 | NA | NA | NA | ||||||
GLY | D:513 | D:513 | 23.0 | 0.307 | H | 96.9 | 148.9 | 23.0 | 0.307 | 0.0 | |||||||||||||
3k7v | 1 | P30153 | 100.0 | 0.0 |
X-RAY |
2009-11-03 | GLY | A:513 | A:513 | 21.0 | 0.28 | H | 84.9 | 155.9 | 21.0 | 0.28 | 0.0 | ||||||
3k7w | 1 | P30153 | 100.0 | 0.0 |
X-RAY |
2009-11-03 | GLY | A:513 | A:513 | 20.0 | 0.267 | H | 85.9 | 155.6 | 20.0 | 0.267 | 0.0 | ||||||
6nts | 1 | P30153 | 100.0 | 0.0 |
EM |
2020-05-06 | GLY | A:513 | A:513 | 25.0 | 0.333 | 135.1 | -166.5 | 25.0 | 0.333 | 0.0 | |||||||
7cun | 10 | P30153 | 100.0 | 0.0 |
EM |
2020-11-25 | GLY | J:513 | P:513 | 23.0 | 0.307 | T | 69.8 | -153.6 | 23.0 | 0.307 | 0.0 | ||||||
7k36 | 1 | P30153 | 100.0 | 0.0 |
EM |
2021-03-10 | GLY | A:513 | A:513 | 19.0 | 0.253 | 80.7 | 135.4 | 19.0 | 0.253 | 0.0 | |||||||
7pks | 31 | P30153 | 100.0 | 0.0 |
EM |
2021-12-08 | GLY | EA:513 | p:513 | 31.0 | 0.413 | 78.6 | -154.4 | 31.0 | 0.413 | 0.0 | |||||||
2iae | 1 | Q76MZ3 | 99.83 | 0.0 |
X-RAY |
2006-12-26 | GLY | A:513 | A:513 | 34.0 | 0.453 | H | 69.6 | -174.4 | 34.0 | 0.453 | 0.0 | ||||||
GLY | D:513 | D:513 | 14.0 | 0.187 | H | 17.6 | -130.2 | NA | NA | NA | |||||||||||||
2pf4 | 1 | Q76MZ3 | 99.83 | 0.0 |
X-RAY |
2007-08-07 | GLY | A:513 | A:513 | 23.0 | 0.307 | H | 72.2 | 179.7 | 23.0 | 0.307 | 0.0 | ||||||
GLY | B:513 | B:513 | 24.0 | 0.32 | T | 64.0 | -151.3 | NA | NA | NA | |||||||||||||
GLY | C:513 | C:513 | 16.0 | 0.213 | 133.7 | 178.0 | NA | NA | NA | ||||||||||||||
GLY | D:513 | D:513 | 30.0 | 0.4 | 163.2 | -123.6 | NA | NA | NA | ||||||||||||||
1b3u | 1 | P30153 | 100.0 | 0.0 |
X-RAY |
1999-04-12 | GLY | A:512 | A:512 | 25.0 | 0.333 | H | 91.9 | 164.2 | 25.0 | 0.333 | 0.0 |
HOH |
3.482 |
C |
O |
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GLY | B:512 | B:512 | 28.0 | 0.373 | 93.7 | 170.3 | NA | NA | NA | ||||||||||||||
3fga | 1 | Q76MZ3 | 99.83 | 0.0 |
X-RAY |
2009-09-22 | GLY | A:512 | A:513 | 32.0 | 0.427 | H | 85.1 | 163.5 | 32.0 | 0.427 | 0.0 |
HOH |
8.000 |
O |
O |
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6ef4 | 1 | Q76MZ3 | 99.66 | 0.0 |
X-RAY |
2019-06-26 | GLY | A:514 | A:513 | 22.0 | 0.293 | T | 92.6 | -142.7 | 22.0 | 0.293 | 0.0 | ||||||
6iur | 1 | P30153 | 100.0 | 0.0 |
X-RAY |
2019-12-04 | GLY | A:511 | A:513 | 29.0 | 0.387 | H | 74.3 | 178.0 | 29.0 | 0.387 | 0.0 | ||||||
GLY | B:511 | B:513 | 20.0 | 0.267 | -47.3 | 164.9 | 20.0 | 0.267 | 0.0 | ||||||||||||||
GLY | E:511 | E:513 | 27.0 | 0.36 | T | 60.4 | 170.0 | NA | NA | NA | |||||||||||||
GLY | F:511 | F:513 | 35.0 | 0.467 | H | 74.6 | -178.6 | NA | NA | NA | |||||||||||||
2nyl | 1 | Q96DH3 | 100.0 | 0.0 |
X-RAY |
2006-12-12 | GLY | A:506 | A:513 | 38.0 | 0.507 | 62.2 | 143.7 | 38.0 | 0.507 | 0.0 | |||||||
GLY | D:506 | D:513 | 37.0 | 0.493 | T | 55.7 | 153.1 | NA | NA | NA | |||||||||||||
2nym | 1 | Q96DH3 | 100.0 | 0.0 |
X-RAY |
2006-12-12 | GLY | A:506 | A:513 | 39.0 | 0.52 | T | 54.0 | 160.6 | 39.0 | 0.52 | 0.0 | ||||||
GLY | D:506 | D:513 | 36.0 | 0.48 | T | 51.2 | 159.7 | NA | NA | NA | |||||||||||||
4i5l | 1 | P30153 | 99.66 | 0.0 |
X-RAY |
2013-05-08 | GLY | A:508 | A:513 | 28.0 | 0.373 | H | 85.1 | 168.3 | 28.0 | 0.373 | 0.0 |
HOH |
3.119 |
N |
O |
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GLY | D:508 | D:513 | 32.0 | 0.427 | H | 80.1 | 165.9 | NA | NA | NA | |||||||||||||
4i5n | 1 | P30153 | 99.66 | 0.0 |
X-RAY |
2013-05-08 | GLY | A:508 | A:513 | 28.0 | 0.373 | H | 83.6 | 157.3 | 28.0 | 0.373 | 0.0 |
HOH |
3.160 |
O |
O |
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GLY | D:508 | D:513 | 31.0 | 0.413 | 88.9 | 155.2 | NA | NA | NA | ||||||||||||||
3dw8 | 1 | P30153 | 100.0 | 0.0 |
X-RAY |
2008-10-07 | GLY | A:506 | A:513 | 19.0 | 0.253 | H | 69.6 | 132.6 | 19.0 | 0.253 | 0.0 | ||||||
GLY | D:506 | D:513 | 22.0 | 0.293 | H | 70.2 | 133.5 | NA | NA | NA | |||||||||||||
5w0w | 1 | P30153 | 100.0 | 0.0 |
X-RAY |
2018-01-17 | GLY | A:509 | A:513 | 30.0 | 0.4 | T | 61.7 | -159.8 | 30.0 | 0.4 | 0.0 | ||||||
GLY | D:509 | D:513 | 19.0 | 0.253 | H | 87.8 | 149.7 | NA | NA | NA | |||||||||||||
GLY | G:509 | G:513 | 24.0 | 0.32 | 55.2 | -164.9 | NA | NA | NA | ||||||||||||||
GLY | J:509 | J:513 | 12.0 | 0.16 | 144.2 | 151.4 | NA | NA | NA | ||||||||||||||
2pkg | 1 | P30153 | 100.0 | 0.0 |
X-RAY |
2007-05-15 | GLY | A:504 | A:513 | 34.0 | 0.453 | 71.0 | 157.1 | 34.0 | 0.453 | 0.0 | |||||||
GLY | B:504 | B:513 | 28.0 | 0.373 | 79.2 | 139.1 | NA | NA | NA | ||||||||||||||
3c5w | 1 | P30153 | 88.39 | 1e-141 |
X-RAY |
2008-04-15 | GLY | A:156 | A:513 | 33.0 | 0.44 | H | 85.6 | -179.5 | 33.0 | 0.44 | 0.0 |
HOH |
3.211 |
C |
O |
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4lac | 2 | ? | 85.71 | 9e-137 |
X-RAY |
2013-10-09 | GLY | B:182 | A:513 | 18.0 | 0.24 | H | 78.4 | 166.0 | 18.0 | 0.24 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p30153-f1 | 1 | P30153 | 100.0 | 0.0 | GLY | A:513 | A:513 | 29.0 | 0.387 | H | 74.8 | 174.3 | |
af-p30154-f1 | 1 | P30154 | 86.4 | 0.0 | GLY | A:525 | A:525 | 27.0 | 0.36 | 82.8 | 167.1 |