Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 54783793 . T A CCDS12886.1:NM_005874.3:c.208Att>Ttt_NP_005865.2:p.70I>F Homo sapiens leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 (LILRB2), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aed 1 Q8N423 99.24 0.0 X-RAY
 2019-07-31 ILE A:47 A:47 73.0 0.417 -131.3 -13.9 73.0 0.417 0.0
6zdx 2 A0A0G2JQ46 80.15 0.0 X-RAY
 2020-07-22 ILE B:78 B:47 23.0 0.131 G -56.5 -41.0 23.0 0.131 0.0
6aee 4 A0A0G2JQ44 80.61 0.0 X-RAY
 2019-07-31 ILE G:46 G:47 21.0 0.12 G -73.2 -39.1 21.0 0.12 0.0
ILE H:46 H:47 22.0 0.126 G -75.0 -33.0 NA NA NA
6bcs 1 A0A0G2JNQ7 99.49 3e-141 X-RAY
 2018-09-05 ILE A:48 A:47 75.0 0.429 E -113.0 161.9 75.0 0.429 0.0 BEN
DMS
HOH
 4.093
9.208
3.659
 CG2
CG2
CG2
 C3
C2
O
2gw5 1 Q8N423 99.49 5e-141 X-RAY
 2006-06-20 ILE A:47 A:47 113.0 NA 360.0 148.9 113.0 NA NA IPA
HOH
 4.869
5.094
 CB
C
 C3
O
2dyp 4 Q8N423 98.98 3e-139 X-RAY
 2006-11-07 ILE D:47 D:47 26.0 0.149 T 75.7 -36.4 2.0 0.011 0.138 A:P17693:0.137
 HOH
 9.000
 N
 O
1ugn 1 Q8NHL6 81.31 7e-105 X-RAY
 2004-08-10 ILE A:47 A:47 23.0 0.131 H -66.8 -38.9 23.0 0.131 0.0 HOH
 2.729
 O
 O
3d2u 3 Q8NHL6 80.81 3e-104 X-RAY
 2008-07-08 ILE C:47 D:47 16.0 0.091 H -52.5 -54.7 8.0 0.046 0.045 A:Q4A1U8:0.046
 HOH
 3.770
 CG2
 O
ILE F:47 H:47 17.0 0.097 G -56.5 -47.1 NA NA NA
6k60 4 A0A0G2JQ44 81.12 6e-104 X-RAY
 2019-11-27 ILE D:48 D:47 23.0 0.131 G -84.6 -14.7 23.0 0.131 0.0
ILE H:48 H:47 28.0 0.16 H -54.6 -40.9 NA NA NA
1g0x 1 Q8NHL6 81.12 1e-103 X-RAY
 2001-01-17 ILE A:46 A:47 21.0 0.12 H -56.1 -45.6 21.0 0.12 0.0 HOH
 3.015
 O
 O
1p7q 4 Q8NHL6 81.12 1e-103 X-RAY
 2003-10-14 ILE D:46 D:47 21.0 0.12 H -56.1 -45.7 21.0 0.12 0.0
1ufu 1 Q8NHL6 81.12 1e-103 X-RAY
 2004-08-10 ILE A:46 A:47 24.0 0.137 G -80.5 -33.6 24.0 0.137 0.0
4no0 4 Q8NHL6 81.54 2e-103 X-RAY
 2014-11-19 ILE D:44 D:47 20.0 0.114 G -58.1 -43.5 20.0 0.114 0.0 HOH
 3.551
 CD1
 O
6ewa 4 D9IDM8 81.54 2e-103 X-RAY
 2018-11-07 ILE D:44 D:47 23.0 0.131 G -69.4 -43.0 23.0 0.131 0.0
ILE H:44 H:47 21.0 0.12 G -58.4 -46.2 NA NA NA
6ewc 4 A0A0G2JQ44 81.54 2e-103 X-RAY
 2018-11-07 ILE D:44 D:47 20.0 0.114 G -63.5 -48.4 20.0 0.114 0.0
ILE H:44 H:47 19.0 0.109 G -64.7 -48.4 NA NA NA
6ewo 4 D9IDM8 81.54 2e-103 X-RAY
 2018-11-07 ILE D:44 D:47 25.0 0.143 G -63.2 -44.6 25.0 0.143 0.0 HOH
 6.102
 CD1
 O
ILE H:44 H:47 24.0 0.137 G -65.0 -44.9 NA NA NA
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
 2005-08-02 ILE A:47 A:47 23.0 0.131 G -55.4 -45.9 23.0 0.131 0.0 HOH
 3.871
 CD1
 O
ILE B:47 B:47 19.0 0.109 G -67.7 -26.3 19.0 0.109 0.0 HOH
 4.444
 CG2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n423-f1 1 Q8N423 100.0 0.0 ILE A:70 A:70 28.0 0.16 G -61.9 -37.3
af-o75019-f1 1 O75019 84.62 0.0 ILE A:70 A:70 23.0 0.131 G -63.5 -41.1
af-q8n6c8-f1 1 Q8N6C8 81.12 0.0 ILE A:70 A:70 23.0 0.131 G -63.2 -39.1