Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 54803240 . T A CCDS12887.1:NM_006865.3:c.437gAc>gTc_NP_006856.3:p.146D>V Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 (LILRA3), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6zdx 2 A0A0G2JQ46 85.71 0.0 X-RAY
 2020-07-22 ASP B:154 B:123 33.0 0.22 E -126.3 139.6 33.0 0.22 0.0
6aee 4 A0A0G2JQ44 86.22 0.0 X-RAY
 2019-07-31 ASP G:122 G:123 29.0 0.193 E -100.9 157.0 29.0 0.193 0.0
ASP H:122 H:123 41.0 0.273 E -106.9 150.9 NA NA NA
6aed 1 Q8N423 81.36 0.0 X-RAY
 2019-07-31 GLU A:122 A:123 97.0 0.511 E -124.9 148.9 97.0 0.511 0.0
3d2u 3 Q8NHL6 88.38 3e-121 X-RAY
 2008-07-08 ASP C:123 D:123 55.0 0.367 E -114.0 136.0 55.0 0.367 0.0 HOH
 2.518
 OD2
 O
ASP F:123 H:123 55.0 0.367 E -107.8 135.9 NA NA NA
6k60 4 A0A0G2JQ44 88.78 5e-121 X-RAY
 2019-11-27 ASP D:124 D:123 67.0 0.447 B -93.4 138.1 67.0 0.447 0.0
ASP H:124 H:123 138.0 0.92 -143.8 105.3 NA NA NA
1g0x 1 Q8NHL6 88.78 9e-121 X-RAY
 2001-01-17 ASP A:122 A:123 27.0 0.18 E -112.5 134.9 27.0 0.18 0.0 HOH
 2.661
 OD1
 O
1p7q 4 Q8NHL6 88.78 9e-121 X-RAY
 2003-10-14 ASP D:122 D:123 53.0 0.353 E -98.0 150.1 53.0 0.353 0.0
1ufu 1 Q8NHL6 88.78 9e-121 X-RAY
 2004-08-10 ASP A:122 A:123 67.0 0.447 E -120.6 138.4 67.0 0.447 0.0
1ugn 1 Q8NHL6 87.88 2e-120 X-RAY
 2004-08-10 ASP A:123 A:123 55.0 0.367 E -114.2 135.4 55.0 0.367 0.0 HOH
 2.637
 O
 O
4no0 4 Q8NHL6 88.72 2e-120 X-RAY
 2014-11-19 ASP D:120 D:123 42.0 0.28 E -118.2 113.0 42.0 0.28 0.0 HOH
 6.206
 OD2
 O
6ewa 4 D9IDM8 88.72 2e-120 X-RAY
 2018-11-07 ASP D:120 D:123 41.0 0.273 E -104.1 124.9 41.0 0.273 0.0 HOH
 4.323
 O
 O
ASP H:120 H:123 33.0 0.22 E -121.4 120.9 NA NA NA
6ewc 4 A0A0G2JQ44 88.72 2e-120 X-RAY
 2018-11-07 ASP D:120 D:123 40.0 0.267 E -116.1 126.8 40.0 0.267 0.0
ASP H:120 H:123 57.0 0.38 E -116.0 129.4 NA NA NA
6ewo 4 D9IDM8 88.72 2e-120 X-RAY
 2018-11-07 ASP D:120 D:123 34.0 0.227 E -114.6 121.6 34.0 0.227 0.0 HOH
 2.706
 OD2
 O
ASP H:120 H:123 33.0 0.22 E -116.9 128.3 NA NA NA
1vdg 1 Q8NHL6 88.27 3e-120 X-RAY
 2005-08-02 ASP A:123 A:123 39.0 0.26 E -108.1 131.9 39.0 0.26 0.0 HOH
 2.765
 OD2
 O
ASP B:123 B:123 48.0 0.32 E -113.0 142.2 48.0 0.32 0.0
5knm 3 Q8NHL6 87.88 3e-120 X-RAY
 2017-06-14 ASP C:192 D:123 30.0 0.2 E -106.4 174.1 30.0 0.2 0.0
2otp 1 Q8N149 83.84 4e-112 X-RAY
 2008-02-19 VAL A:121 A:121 63.0 0.406 E -116.6 170.4 43.0 0.277 0.129 B:Q8N149:0.129
VAL B:121 B:121 79.0 0.51 E -99.4 132.0 34.0 0.219 0.291 A:Q8N149:0.29
 HOH
 4.909
 O
 O
2gw5 1 Q8N423 80.3 5e-106 X-RAY
 2006-06-20 GLU A:122 A:123 83.0 0.437 E -136.7 139.1 83.0 0.437 0.0 HOH
 2.632
 OE2
 O
6bcs 1 A0A0G2JNQ7 80.3 6e-106 X-RAY
 2018-09-05 GLU A:123 A:123 91.0 0.479 E -131.7 148.5 91.0 0.479 0.0 BEN
CL
HOH
 8.816
9.971
3.792
 O
N
OE2
 C5
CL
O
2dyp 4 Q8N423 80.2 2e-105 X-RAY
 2006-11-07 GLU D:122 D:122 80.0 0.421 E -134.4 149.8 80.0 0.421 0.0 HOH
 4.340
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n6c8-f1 1 Q8N6C8 100.0 0.0 ASP A:146 A:146 33.0 0.22 E -115.7 146.4
af-o75019-f1 1 O75019 85.39 0.0 VAL A:146 A:146 42.0 0.271 E -128.4 141.2
af-q8nhl6-f1 1 Q8NHL6 86.4 0.0 ASP A:146 A:146 28.0 0.187 E -111.9 143.7
af-q8n149-f1 1 Q8N149 81.84 0.0 VAL A:144 A:144 27.0 0.174 E -132.1 139.2
af-q8n423-f1 1 Q8N423 81.12 0.0 GLU A:145 A:145 81.0 0.426 E -135.9 143.0