Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 55085885 . A C CCDS12900.1:NM_006866.2:c.188gAa>gCa_NP_006857.1:p.63E>A Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 (LILRA2), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aee 4 A0A0G2JQ44 80.41 0.0 X-RAY
 2019-07-31 GLU G:39 G:40 67.0 0.353 S -67.4 -59.7 36.0 0.189 0.164 A:P17693:0.163
GLU H:39 H:40 37.0 0.195 S -80.1 -169.3 NA NA NA
2otp 1 Q8N149 99.49 6e-142 X-RAY
 2008-02-19 GLU A:40 A:40 112.0 0.589 S -150.5 -17.9 112.0 0.589 0.0 HOH
 3.319
 CG
 O
GLU B:40 B:40 80.0 0.421 -120.9 -155.7 62.0 0.326 0.095 A:Q8N149:0.095
 HOH
 4.042
 O
 O
3d2u 3 Q8NHL6 80.81 2e-104 X-RAY
 2008-07-08 GLU C:40 D:40 54.0 0.284 S -62.2 147.1 39.0 0.205 0.079 A:Q4A1U8:0.079
 HOH
 3.102
 O
 O
GLU F:40 H:40 52.0 0.274 S -66.5 143.6 NA NA NA
6k60 4 A0A0G2JQ44 81.12 3e-104 X-RAY
 2019-11-27 GLU D:41 D:40 53.0 0.279 S -77.6 147.6 47.0 0.247 0.032 A:P17693:0.032
GLU H:41 H:40 48.0 0.253 T -59.9 137.8 NA NA NA
1ugn 1 Q8NHL6 80.3 8e-104 X-RAY
 2004-08-10 GLU A:40 A:40 38.0 0.2 S -72.5 148.0 38.0 0.2 0.0 HOH
 2.634
 OE1
 O
1g0x 1 Q8NHL6 80.71 1e-103 X-RAY
 2001-01-17 GLU A:39 A:40 41.0 0.216 S -76.9 151.0 41.0 0.216 0.0 HOH
 2.833
 OE1
 O
1p7q 4 Q8NHL6 80.71 1e-103 X-RAY
 2003-10-14 GLU D:39 D:40 46.0 0.242 T -53.6 174.1 29.0 0.153 0.089 A:P01892:0.089
1ufu 1 Q8NHL6 80.71 1e-103 X-RAY
 2004-08-10 GLU A:39 A:40 34.0 0.179 S -77.2 167.4 34.0 0.179 0.0
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
 2005-08-02 GLU A:40 A:40 52.0 0.274 S -70.9 137.2 52.0 0.274 0.0 HOH
 4.352
 CA
 O
GLU B:40 B:40 49.0 0.258 S -88.4 155.7 49.0 0.258 0.0 HOH
 2.679
 OE2
 O
4no0 4 Q8NHL6 80.51 5e-102 X-RAY
 2014-11-19 GLU D:37 D:40 53.0 0.279 S -70.6 138.5 39.0 0.205 0.074 A:P01892:0.074
 EDO
HOH
 7.358
3.144
 C
OE2
 O2
O
6ewa 4 D9IDM8 80.51 5e-102 X-RAY
 2018-11-07 GLU D:37 D:40 54.0 0.284 S -69.0 139.3 40.0 0.211 0.073 A:P01892:0.074
GLU H:37 H:40 48.0 0.253 S -76.7 163.2 NA NA NA
6ewc 4 A0A0G2JQ44 80.51 5e-102 X-RAY
 2018-11-07 GLU D:37 D:40 46.0 0.242 S -70.4 171.1 35.0 0.184 0.058 A:P01892:0.058
GLU H:37 H:40 44.0 0.232 S -70.5 168.6 NA NA NA
6ewo 4 D9IDM8 80.51 5e-102 X-RAY
 2018-11-07 GLU D:37 D:40 47.0 0.247 S -64.2 148.7 36.0 0.189 0.058 A:P01892:0.058
 HOH
 5.041
 N
 O
GLU H:37 H:40 43.0 0.226 S -73.4 163.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n149-f1 1 Q8N149 100.0 0.0 GLU A:63 A:63 62.0 0.326 T -59.5 151.8
af-q8n6c8-f1 1 Q8N6C8 81.84 0.0 GLU A:63 A:63 54.0 0.284 S -65.1 148.9
af-q8nhl6-f1 1 Q8NHL6 81.15 0.0 GLU A:63 A:63 44.0 0.232 S -66.5 149.8