Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 55085962 . T A CCDS12900.1:NM_006866.2:c.265Tgg>Agg_NP_006857.1:p.89W>R Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 (LILRA2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aee 4 A0A0G2JQ44 80.41 0.0 X-RAY
 2019-07-31 TRP G:66 G:67 72.0 0.282 T -70.9 -23.0 43.0 0.169 0.113 B:P61769:0.114
TRP H:66 H:67 72.0 0.282 G -67.0 -17.0 NA NA NA
2otp 1 Q8N149 99.49 6e-142 X-RAY
 2008-02-19 TRP A:66 A:66 125.0 0.49 S -74.4 -34.7 108.0 0.424 0.066 B:Q8N149:0.067
 HOH
 5.939
 O
 O
TRP B:66 B:66 98.0 0.384 G -48.2 -47.6 82.0 0.322 0.062 A:Q8N149:0.063
 HOH
 5.954
 O
 O
3d2u 3 Q8NHL6 80.81 2e-104 X-RAY
 2008-07-08 TRP C:67 D:67 68.0 0.267 G -60.4 -35.8 24.0 0.094 0.173 B:P61769:0.173
 HOH
 2.720
 O
 O
TRP F:67 H:67 83.0 0.325 G -56.1 -35.4 NA NA NA
6k60 4 A0A0G2JQ44 81.12 3e-104 X-RAY
 2019-11-27 TRP D:68 D:67 127.0 0.498 G -62.0 -20.5 60.0 0.235 0.263 B:P61769:0.263
TRP H:68 H:67 129.0 0.506 G -57.4 -34.6 NA NA NA
1ugn 1 Q8NHL6 80.3 8e-104 X-RAY
 2004-08-10 TRP A:67 A:67 112.0 0.439 G -54.8 -33.2 112.0 0.439 0.0 HOH
 2.903
 N
 O
1g0x 1 Q8NHL6 80.71 1e-103 X-RAY
 2001-01-17 TRP A:66 A:67 62.0 0.243 G -53.8 -36.3 62.0 0.243 0.0 HOH
 2.839
 O
 O
1p7q 4 Q8NHL6 80.71 1e-103 X-RAY
 2003-10-14 TRP D:66 D:67 126.0 0.494 T -41.5 -33.7 46.0 0.18 0.314 B:P61769:0.314
1ufu 1 Q8NHL6 80.71 1e-103 X-RAY
 2004-08-10 TRP A:66 A:67 98.0 0.384 T -65.9 -11.6 98.0 0.384 0.0
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
 2005-08-02 TRP A:67 A:67 79.0 0.31 G -49.2 -31.2 79.0 0.31 0.0 HOH
 3.842
 CG
 O
TRP B:67 B:67 80.0 0.314 G -57.0 -44.6 80.0 0.314 0.0 HOH
 3.045
 CD1
 O
4no0 4 Q8NHL6 80.51 5e-102 X-RAY
 2014-11-19 TRP D:64 D:67 142.0 0.557 G -61.5 -30.1 63.0 0.247 0.31 B:P61769:0.31
 HOH
 4.727
 CZ3
 O
6ewa 4 D9IDM8 80.51 5e-102 X-RAY
 2018-11-07 TRP D:64 D:67 129.0 0.506 G -58.9 -29.4 49.0 0.192 0.314 B:P61769:0.314
 HOH
 6.939
 CH2
 O
TRP H:64 H:67 124.0 0.486 G -57.4 -28.8 NA NA NA
6ewc 4 A0A0G2JQ44 80.51 5e-102 X-RAY
 2018-11-07 TRP D:64 D:67 133.0 0.522 G -56.2 -22.6 57.0 0.224 0.298 B:P61769:0.298
TRP H:64 H:67 133.0 0.522 G -56.8 -22.5 NA NA NA
6ewo 4 D9IDM8 80.51 5e-102 X-RAY
 2018-11-07 TRP D:64 D:67 130.0 0.51 G -50.6 -30.3 50.0 0.196 0.314 B:P61769:0.314
 HOH
 3.818
 CD1
 O
TRP H:64 H:67 136.0 0.533 G -59.7 -27.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n149-f1 1 Q8N149 100.0 0.0 TRP A:89 A:89 142.0 0.557 G -53.6 -29.3
af-q8n6c8-f1 1 Q8N6C8 81.84 0.0 TRP A:90 A:90 152.0 0.596 G -54.7 -23.5
af-q8nhl6-f1 1 Q8NHL6 81.15 0.0 TRP A:90 A:90 126.0 0.494 G -52.9 -29.8