Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 8464770 . G A CCDS12201.1:NM_004218.3:c.64Gtg>Atg_NP_004209.2:p.22V>M Homo sapiens RAB11B, member RAS oncogene family (RAB11B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ojk 1 Q15907 100.0 3e-146 X-RAY
 2014-08-06 VAL A:17 A:22 0.0 0.0 S -76.0 -21.4 0.0 0.0 0.0 GDP
HOH
 3.408
3.995
 N
N
 O3B
O
VAL B:17 B:22 0.0 0.0 S -80.4 -20.3 NA NA NA
5fbl 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 VAL B:27 B:22 8.0 0.052 S -73.3 -20.6 8.0 0.052 0.0 GSP
 3.153
 N
 O1B
5fbq 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 VAL B:27 B:22 5.0 0.032 S -73.1 -21.0 5.0 0.032 0.0 GDP
 3.034
 N
 O1B
2f9l 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 VAL A:16 A:22 0.0 0.0 S -90.2 -16.5 0.0 0.0 0.0 MG
GDP
HOH
 7.064
3.126
3.869
 N
N
CG1
 MG
O2B
O
2f9m 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 VAL A:16 A:22 0.0 0.0 S -73.1 -19.4 0.0 0.0 0.0 MG
GNP
HOH
 7.327
3.346
3.762
 N
N
CG1
 MG
O1B
O
5fbr 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 VAL B:27 B:22 1.0 0.006 S -73.4 -21.2 1.0 0.006 0.0 GSP
 3.268
 CG2
 O2B
5fbv 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 VAL B:27 B:22 0.0 0.0 S -73.1 -20.3 0.0 0.0 0.0 GSP
 3.017
 N
 O2B
5fbw 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 VAL B:27 B:22 5.0 0.032 S -76.6 -21.5 5.0 0.032 0.0 GSP
 3.152
 N
 O2B
4d0l 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 VAL B:25 B:22 2.0 0.013 S -73.5 -20.0 2.0 0.013 0.0 GSP
MG
HOH
 3.377
7.830
6.949
 N
N
CG2
 O1B
MG
O
VAL D:25 D:22 0.0 0.0 S -75.5 -20.1 NA NA NA
VAL F:25 F:22 0.0 0.0 S -75.0 -21.3 NA NA NA
4d0m 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 VAL B:25 B:22 2.0 0.013 S -72.6 -19.4 2.0 0.013 0.0 GSP
MG
 3.445
7.918
 N
N
 O1B
MG
VAL D:25 D:22 2.0 0.013 S -73.0 -19.3 2.0 0.013 0.0 GSP
MG
 3.368
7.905
 N
N
 O1B
MG
VAL H:25 H:22 3.0 0.019 S -72.5 -19.6 NA NA NA
VAL J:25 J:22 2.0 0.013 S -73.2 -19.2 NA NA NA
VAL N:25 N:22 2.0 0.013 S -72.7 -19.4 NA NA NA
VAL P:25 P:22 2.0 0.013 S -72.7 -19.4 2.0 0.013 0.0 GSP
MG
 3.689
8.293
 N
N
 O1B
MG
VAL R:25 R:22 2.0 0.013 S -73.5 -18.4 NA NA NA
VAL T:25 T:22 2.0 0.013 S -73.4 -18.7 2.0 0.013 0.0 GSP
MG
 3.395
7.858
 N
N
 O1B
MG
VAL X:25 X:22 2.0 0.013 S -73.0 -19.4 NA NA NA
VAL Z:25 Z:22 2.0 0.013 S -73.3 -19.4 NA NA NA
VAL DA:25 d:22 2.0 0.013 S -72.3 -19.4 NA NA NA
VAL HA:25 h:22 2.0 0.013 S -73.1 -19.1 NA NA NA
5c46 2 P62491 90.83 3e-144 X-RAY
 2016-01-20 VAL B:25 F:22 0.0 0.0 S -75.2 -18.9 0.0 0.0 0.0 GSP
MG
 3.546
7.464
 N
N
 O1B
MG
5c4g 1 P62491 90.83 3e-144 X-RAY
 2016-01-20 VAL A:25 B:22 1.0 0.006 S -79.7 -23.0 1.0 0.006 0.0 MG
GDP
 7.660
3.922
 N
N
 MG
O2B
5euq 1 P62491 90.83 3e-144 X-RAY
 2016-02-24 VAL A:25 B:22 3.0 0.019 S -96.6 9.1 3.0 0.019 0.0 GDP
 3.307
 N
 O2B
6djl 1 P62491 90.83 3e-144 X-RAY
 2018-09-26 VAL A:25 A:22 10.0 0.065 G -98.1 -18.2 10.0 0.065 0.0
VAL F:25 F:22 0.0 0.0 S -95.1 9.3 NA NA NA
VAL G:25 G:22 4.0 0.026 S -87.2 10.6 NA NA NA
VAL H:25 H:22 4.0 0.026 S -88.6 12.5 NA NA NA
4uj4 1 P62491 95.63 9e-128 X-RAY
 2015-08-12 VAL A:21 A:22 0.0 0.0 S -78.3 -14.3 NA NA NA
VAL D:21 D:22 0.0 0.0 S -80.8 -15.5 0.0 0.0 0.0 GNP
MG
 3.693
7.483
 N
N
 O1B
MG
VAL G:21 G:22 0.0 0.0 S -78.3 -13.9 0.0 0.0 0.0 GNP
MG
 3.830
7.520
 N
N
 O1B
MG
VAL J:21 J:22 0.0 0.0 S -78.4 -16.2 NA NA NA
4uj3 1 P62491 95.08 3e-127 X-RAY
 2015-08-12 VAL A:23 A:22 0.0 0.0 S -78.0 -14.9 0.0 0.0 0.0 GNP
MG
HOH
 3.516
7.447
3.708
 N
N
CG1
 O1B
MG
O
VAL D:23 D:22 0.0 0.0 S -80.4 -15.7 NA NA NA
VAL G:23 G:22 0.0 0.0 S -78.1 -14.4 NA NA NA
VAL J:23 J:22 0.0 0.0 S -78.2 -16.4 NA NA NA
VAL M:23 M:22 0.0 0.0 S -79.2 -15.3 NA NA NA
VAL P:23 P:22 0.0 0.0 S -79.6 -13.9 NA NA NA
VAL S:23 S:22 0.0 0.0 S -82.2 -16.2 NA NA NA
VAL V:23 V:22 0.0 0.0 S -79.2 -15.4 NA NA NA
5jcz 1 P62491 97.74 3e-126 X-RAY
 2016-09-28 VAL A:24 A:22 0.0 0.0 S -79.4 -17.5 0.0 0.0 0.0 MG
GDP
BEF
EDO
HOH
 7.305
3.488
5.850
7.799
4.035
 N
N
N
CG2
CG1
 MG
O2B
BE
O1
O
VAL D:24 D:22 0.0 0.0 S -81.4 -18.5 NA NA NA
VAL F:24 I:22 0.0 0.0 S -79.2 -19.5 NA NA NA
4lwz 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 VAL A:22 A:22 0.0 0.0 S -98.3 -13.1 0.0 0.0 0.0 GDP
MG
HOH
 3.472
7.326
6.062
 N
N
N
 O2B
MG
O
VAL C:22 C:22 0.0 0.0 S -75.7 -9.2 NA NA NA
4lx0 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 VAL A:22 A:22 0.0 0.0 S -76.8 -16.6 0.0 0.0 0.0 MG
BEF
GDP
HOH
 7.421
5.832
3.437
4.023
 N
N
N
CG1
 MG
F1
O2B
O
VAL C:22 C:22 0.0 0.0 S -78.4 -19.1 NA NA NA
4uj5 1 P62491 94.54 8e-126 X-RAY
 2015-08-12 VAL A:21 A:22 0.0 0.0 S -85.7 -17.8 0.0 0.0 0.0 GNP
MG
SO4
HOH
 3.680
7.541
7.089
3.901
 N
N
N
CG1
 O1B
MG
O2
O
VAL B:21 B:22 0.0 0.0 S -86.5 -16.1 NA NA NA
4c4p 1 P62491 97.69 2e-123 X-RAY
 2013-09-18 VAL A:22 A:22 0.0 0.0 S -79.1 -17.5 0.0 0.0 0.0 GNP
MG
HOH
 2.958
7.032
3.119
 H
H
HG12
 O1B
MG
O
6ixv 2 P62491 97.69 2e-123 X-RAY
 2019-03-20 VAL E:24 E:22 3.0 0.019 S -74.2 -20.5 3.0 0.019 0.0 PO4
 3.072
 N
 O2
VAL F:24 F:22 7.0 0.045 S -69.2 -53.5 NA NA NA
VAL G:24 G:22 6.0 0.039 S -88.1 -6.2 NA NA NA
VAL H:24 H:22 8.0 0.052 S -67.5 -43.9 NA NA NA
1oiv 1 P24410 97.69 8e-123 X-RAY
 2004-01-08 VAL A:40 A:22 0.0 0.0 S -81.6 -14.9 0.0 0.0 0.0 GDP
HOH
 3.300
3.814
 N
N
 O2B
O
VAL B:40 B:22 0.0 0.0 S -81.1 -14.1 0.0 0.0 0.0 GDP
HOH
 3.259
4.070
 N
CG1
 O2B
O
2gzd 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 VAL A:22 A:22 0.0 0.0 S -57.5 -16.7 0.0 0.0 0.0 MG
GTP
HOH
 7.577
3.482
4.141
 N
N
CG1
 MG
O1B
O
VAL B:22 B:22 0.0 0.0 S -65.9 -22.4 0.0 0.0 0.0 MG
GTP
HOH
 7.614
3.473
4.084
 N
N
CG1
 MG
O1B
O
2gzh 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 VAL A:22 A:22 0.0 0.0 S -82.1 -13.3 0.0 0.0 0.0 MG
GTP
HOH
 7.317
3.326
3.800
 N
N
CG1
 MG
O1B
O
1oiw 1 P24410 97.11 2e-121 X-RAY
 2004-01-08 VAL A:40 A:22 0.0 0.0 S -76.2 -18.6 0.0 0.0 0.0 GSP
MG
HOH
 3.350
7.462
3.762
 N
N
N
 O1B
MG
O
1oix 1 P24410 97.11 2e-121 X-RAY
 2005-01-25 VAL A:40 A:22 0.0 0.0 S -80.7 -15.5 0.0 0.0 0.0 GDP
PO4
MG
HOH
 3.259
6.055
7.337
3.895
 N
N
N
N
 O1B
O4
MG
O
2hv8 1 P62491 97.06 3e-119 X-RAY
 2006-11-21 VAL A:19 A:22 0.0 0.0 S -73.5 -17.7 0.0 0.0 0.0 MG
GTP
HOH
 7.347
3.419
4.007
 N
N
CG1
 MG
O1B
O
VAL C:19 B:22 0.0 0.0 S -74.9 -19.7 NA NA NA
VAL E:19 C:22 0.0 0.0 S -72.4 -20.8 NA NA NA
6iy1 3 P62491 97.62 4e-119 X-RAY
 2019-12-18 VAL F:17 F:22 0.0 0.0 S -82.7 -14.6 NA NA NA
1yzk 1 P62491 97.62 1e-118 X-RAY
 2005-07-26 VAL A:31 A:22 0.0 0.0 S -73.3 -20.3 0.0 0.0 0.0 MG
GNP
HOH
 7.431
3.470
3.690
 N
N
N
 MG
O1B
O
6iy1 2 P62491 97.6 3e-118 X-RAY
 2019-12-18 VAL D:16 D:22 0.0 0.0 S -71.3 -24.8 NA NA NA
5ez5 1 P62491 97.02 4e-118 X-RAY
 2016-12-07 VAL A:15 A:22 0.0 0.0 S -77.1 -15.2 0.0 0.0 0.0 MG
GTP
HOH
 7.512
3.469
7.757
 N
N
N
 MG
O2B
O
VAL B:15 B:22 1.0 0.006 S -74.1 -13.5 1.0 0.006 0.0 MG
GTP
HOH
 7.603
3.629
6.188
 N
N
N
 MG
O1B
O
2d7c 1 P62491 97.01 5e-117 X-RAY
 2006-09-26 VAL A:16 A:22 0.0 0.0 S -72.8 -19.0 0.0 0.0 0.0 MG
GTP
HOH
 7.531
3.498
3.828
 N
N
N
 MG
O1B
O
VAL B:16 B:22 0.0 0.0 S -73.6 -19.2 NA NA NA
6iy1 1 P62491 97.58 2e-116 X-RAY
 2019-12-18 VAL A:14 A:22 0.0 0.0 S -88.5 -10.6 0.0 0.0 0.0 GDP
HOH
 3.251
4.151
 N
CG1
 O1B
O
VAL B:14 B:22 0.0 0.0 S -85.6 -17.0 NA NA NA
VAL C:14 C:22 0.0 0.0 S -86.2 -11.5 NA NA NA
VAL E:14 E:22 0.0 0.0 S -78.0 -15.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15907-f1 1 Q15907 100.0 1e-164 VAL A:22 A:22 0.0 0.0 S -70.7 -16.3
af-p62491-f1 1 P62491 91.28 6e-146 VAL A:22 A:22 0.0 0.0 S -71.6 -15.3