Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 8467037 . G A CCDS12201.1:NM_004218.3:c.304Gtg>Atg_NP_004209.2:p.102V>M Homo sapiens RAB11B, member RAS oncogene family (RAB11B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ojk 1 Q15907 100.0 3e-146 X-RAY
 2014-08-06 VAL A:97 A:102 1.0 0.006 H -62.5 -42.6 1.0 0.006 0.0 HOH
 4.626
 CB
 O
VAL B:97 B:102 1.0 0.006 H -60.5 -37.5 NA NA NA
5fbl 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 VAL B:107 B:102 3.0 0.019 H -65.6 -24.5 3.0 0.019 0.0
5fbq 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 VAL B:107 B:102 4.0 0.026 H -66.1 -25.0 4.0 0.026 0.0
2f9l 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 VAL A:96 A:102 1.0 0.006 H -55.5 -43.0 1.0 0.006 0.0 HOH
 3.852
 CB
 O
2f9m 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 VAL A:96 A:102 2.0 0.013 H -55.0 -42.1 2.0 0.013 0.0 HOH
 3.651
 CB
 O
5fbr 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 VAL B:107 B:102 3.0 0.019 H -66.0 -24.6 3.0 0.019 0.0
5fbv 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 VAL B:107 B:102 3.0 0.019 H -65.8 -25.0 3.0 0.019 0.0
5fbw 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 VAL B:107 B:102 4.0 0.026 H -61.7 -29.0 4.0 0.026 0.0
4d0l 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 VAL B:105 B:102 3.0 0.019 H -65.5 -24.1 3.0 0.019 0.0
VAL D:105 D:102 2.0 0.013 T -61.2 -28.1 NA NA NA
VAL F:105 F:102 1.0 0.006 T -61.3 -28.2 NA NA NA
4d0m 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 VAL B:105 B:102 2.0 0.013 H -63.2 -23.4 2.0 0.013 0.0
VAL D:105 D:102 2.0 0.013 H -63.5 -23.5 2.0 0.013 0.0
VAL H:105 H:102 2.0 0.013 H -62.9 -23.6 NA NA NA
VAL J:105 J:102 2.0 0.013 H -63.2 -23.5 NA NA NA
VAL N:105 N:102 2.0 0.013 H -62.3 -24.3 NA NA NA
VAL P:105 P:102 2.0 0.013 H -62.5 -24.2 2.0 0.013 0.0
VAL R:105 R:102 2.0 0.013 H -62.8 -23.7 NA NA NA
VAL T:105 T:102 2.0 0.013 H -62.4 -23.9 2.0 0.013 0.0
VAL X:105 X:102 3.0 0.019 H -62.5 -23.7 NA NA NA
VAL Z:105 Z:102 2.0 0.013 H -62.7 -24.0 NA NA NA
VAL DA:105 d:102 2.0 0.013 H -63.3 -23.8 NA NA NA
VAL HA:105 h:102 2.0 0.013 H -62.7 -23.9 NA NA NA
5c46 2 P62491 90.83 3e-144 X-RAY
 2016-01-20 VAL B:105 F:102 1.0 0.006 H -59.1 -41.4 1.0 0.006 0.0
5c4g 1 P62491 90.83 3e-144 X-RAY
 2016-01-20 VAL A:105 B:102 21.0 0.135 H -63.3 -36.2 21.0 0.135 0.0
5euq 1 P62491 90.83 3e-144 X-RAY
 2016-02-24 VAL A:105 B:102 6.0 0.039 H -61.7 -34.2 6.0 0.039 0.0
6djl 1 P62491 90.83 3e-144 X-RAY
 2018-09-26 VAL A:105 A:102 0.0 0.0 H -55.9 -38.5 0.0 0.0 0.0
VAL F:105 F:102 1.0 0.006 H -49.2 -42.9 NA NA NA
VAL G:105 G:102 0.0 0.0 H -53.0 -39.9 NA NA NA
VAL H:105 H:102 0.0 0.0 H -58.9 -40.4 NA NA NA
4uj4 1 P62491 95.63 9e-128 X-RAY
 2015-08-12 VAL A:101 A:102 2.0 0.013 H -59.4 -35.7 NA NA NA
VAL D:101 D:102 1.0 0.006 H -58.4 -35.0 1.0 0.006 0.0
VAL G:101 G:102 2.0 0.013 H -57.6 -36.3 2.0 0.013 0.0
VAL J:101 J:102 2.0 0.013 H -55.9 -38.8 NA NA NA
4uj3 1 P62491 95.08 3e-127 X-RAY
 2015-08-12 VAL A:103 A:102 2.0 0.013 H -58.9 -35.6 2.0 0.013 0.0 HOH
 4.680
 CG2
 O
VAL D:103 D:102 1.0 0.006 H -58.4 -35.3 NA NA NA
VAL G:103 G:102 1.0 0.006 H -57.4 -36.6 NA NA NA
VAL J:103 J:102 1.0 0.006 H -56.2 -38.0 NA NA NA
VAL M:103 M:102 2.0 0.013 H -57.0 -34.6 NA NA NA
VAL P:103 P:102 2.0 0.013 H -57.6 -33.5 NA NA NA
VAL S:103 S:102 2.0 0.013 H -57.8 -35.9 NA NA NA
VAL V:103 V:102 1.0 0.006 H -58.5 -35.9 NA NA NA
5jcz 1 P62491 97.74 3e-126 X-RAY
 2016-09-28 VAL A:104 A:102 1.0 0.006 H -59.0 -36.3 1.0 0.006 0.0 EDO
EDO
HOH
 9.290
3.537
4.459
 O
CB
CG2
 O1
O2
O
VAL D:104 D:102 1.0 0.006 H -60.1 -38.2 NA NA NA
VAL F:104 I:102 17.0 NA H -63.1 -33.9 NA NA NA
4lwz 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 VAL A:102 A:102 1.0 0.006 H -54.8 -35.9 1.0 0.006 0.0 HOH
 4.386
 CB
 O
VAL C:102 C:102 0.0 0.0 H -61.6 -37.8 NA NA NA
4lx0 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 VAL A:102 A:102 0.0 0.0 H -52.1 -43.1 0.0 0.0 0.0 GOL
HOH
 6.189
4.017
 N
CB
 O3
O
VAL C:102 C:102 2.0 0.013 H -58.2 -33.8 NA NA NA
4uj5 1 P62491 94.54 8e-126 X-RAY
 2015-08-12 VAL A:101 A:102 1.0 0.006 H -58.8 -44.1 1.0 0.006 0.0 HOH
 4.664
 CG2
 O
VAL B:101 B:102 2.0 0.013 H -59.7 -43.3 NA NA NA
4c4p 1 P62491 97.69 2e-123 X-RAY
 2013-09-18 VAL A:102 A:102 2.0 0.013 H -56.1 -41.9 2.0 0.013 0.0 HOH
 2.797
 HB
 O
6ixv 2 P62491 97.69 2e-123 X-RAY
 2019-03-20 VAL E:104 E:102 1.0 0.006 H -66.3 -20.4 1.0 0.006 0.0
VAL F:104 F:102 4.0 0.026 H -71.7 -14.5 NA NA NA
VAL G:104 G:102 1.0 0.006 H -66.8 -18.1 NA NA NA
VAL H:104 H:102 4.0 0.026 H -67.8 -16.2 NA NA NA
1oiv 1 P24410 97.69 8e-123 X-RAY
 2004-01-08 VAL A:120 A:102 1.0 0.006 H -52.5 -53.2 1.0 0.006 0.0 HOH
 3.731
 CB
 O
VAL B:120 B:102 1.0 0.006 H -56.6 -40.3 1.0 0.006 0.0 EDO
HOH
 3.400
4.652
 N
CG2
 O2
O
2gzd 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 VAL A:102 A:102 1.0 0.006 H -62.1 -51.8 1.0 0.006 0.0 HOH
 3.794
 CB
 O
VAL B:102 B:102 1.0 0.006 H -56.4 -41.7 1.0 0.006 0.0 HOH
 4.392
 CB
 O
2gzh 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 VAL A:102 A:102 2.0 0.013 H -52.3 -46.2 2.0 0.013 0.0 HOH
 3.652
 CB
 O
1oiw 1 P24410 97.11 2e-121 X-RAY
 2004-01-08 VAL A:120 A:102 1.0 0.006 H -55.8 -34.5 1.0 0.006 0.0 HOH
 3.725
 N
 O
1oix 1 P24410 97.11 2e-121 X-RAY
 2005-01-25 VAL A:120 A:102 1.0 0.006 H -55.4 -37.2 1.0 0.006 0.0 HOH
 3.723
 CB
 O
2hv8 1 P62491 97.06 3e-119 X-RAY
 2006-11-21 VAL A:99 A:102 1.0 0.006 H -56.4 -44.2 1.0 0.006 0.0 HOH
 3.659
 N
 O
VAL C:99 B:102 1.0 0.006 H -57.5 -41.7 NA NA NA
VAL E:99 C:102 1.0 0.006 H -52.8 -39.7 NA NA NA
6iy1 3 P62491 97.62 4e-119 X-RAY
 2019-12-18 VAL F:97 F:102 1.0 0.006 H -62.4 -40.7 NA NA NA
1yzk 1 P62491 97.62 1e-118 X-RAY
 2005-07-26 VAL A:111 A:102 1.0 0.006 H -54.5 -42.6 1.0 0.006 0.0 HOH
 3.598
 CB
 O
6iy1 2 P62491 97.6 3e-118 X-RAY
 2019-12-18 VAL D:96 D:102 1.0 0.006 H -59.1 -38.3 NA NA NA
5ez5 1 P62491 97.02 4e-118 X-RAY
 2016-12-07 VAL A:95 A:102 1.0 0.006 H -48.8 -48.0 1.0 0.006 0.0
VAL B:95 B:102 1.0 0.006 H -50.6 -46.8 1.0 0.006 0.0
2d7c 1 P62491 97.01 5e-117 X-RAY
 2006-09-26 VAL A:96 A:102 1.0 0.006 H -55.0 -42.4 1.0 0.006 0.0 MES
HOH
 7.276
3.648
 O
CB
 C2
O
VAL B:96 B:102 2.0 0.013 H -54.8 -41.5 NA NA NA
6iy1 1 P62491 97.58 2e-116 X-RAY
 2019-12-18 VAL A:94 A:102 1.0 0.006 H -58.5 -37.9 1.0 0.006 0.0 HOH
 4.672
 CG2
 O
VAL B:94 B:102 0.0 0.0 H -54.9 -34.7 NA NA NA
VAL C:94 C:102 0.0 0.0 H -59.0 -38.3 NA NA NA
VAL E:94 E:102 3.0 0.019 H -59.1 -41.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15907-f1 1 Q15907 100.0 1e-164 VAL A:102 A:102 2.0 0.013 H -56.5 -41.6
af-p62491-f1 1 P62491 91.28 6e-146 VAL A:102 A:102 0.0 0.0 H -57.5 -41.0