Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 8467061 . C A CCDS12201.1:NM_004218.3:c.328Cgg>Agg_NP_004209.2:p.110R>R Homo sapiens RAB11B, member RAS oncogene family (RAB11B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4ojk 1 Q15907 100.0 3e-146 X-RAY
 2014-08-06 ARG A:105 A:110 71.0 NA H -60.9 -43.6 71.0 NA NA HOH
 8.169
 N
 O
ARG B:105 B:110 79.0 NA H -59.4 -32.5 NA NA NA
5fbl 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 ARG B:115 B:110 158.0 0.702 H -89.2 -30.7 158.0 0.702 0.0
5fbq 2 P62491 91.28 1e-145 X-RAY
 2016-12-28 ARG B:115 B:110 166.0 0.738 H -88.2 -30.9 166.0 0.738 0.0
2f9l 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 ARG A:104 A:110 62.0 NA H -27.0 -43.6 62.0 NA NA HOH
 2.787
 CB
 O
2f9m 1 Q15907 99.49 2e-145 X-RAY
 2006-04-04 ARG A:104 A:110 147.0 0.653 H -58.7 -41.4 147.0 0.653 0.0 NI
HOH
 8.146
2.644
 C
NH2
 NI
O
5fbr 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 ARG B:115 B:110 179.0 0.796 H -89.6 18.6 179.0 0.796 0.0
5fbv 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 ARG B:115 B:110 171.0 0.76 H -89.8 15.1 171.0 0.76 0.0
5fbw 2 P62491 90.83 2e-144 X-RAY
 2016-12-28 ARG B:115 B:110 50.0 NA H -44.4 -35.0 50.0 NA NA
4d0l 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 ARG B:113 B:110 131.0 0.582 H -89.4 17.2 131.0 0.582 0.0
ARG D:113 D:110 100.0 0.444 T -109.6 13.0 NA NA NA
ARG F:113 F:110 92.0 0.409 T -113.6 46.0 NA NA NA
4d0m 2 P62491 90.83 3e-144 X-RAY
 2014-05-28 ARG B:113 B:110 121.0 0.538 H -90.8 18.3 121.0 0.538 0.0
ARG D:113 D:110 120.0 0.533 H -91.5 18.7 120.0 0.533 0.0
ARG H:113 H:110 118.0 0.524 H -91.1 18.7 NA NA NA
ARG J:113 J:110 119.0 0.529 H -91.4 18.5 NA NA NA
ARG N:113 N:110 119.0 0.529 H -91.2 18.8 NA NA NA
ARG P:113 P:110 119.0 0.529 H -91.1 18.8 119.0 0.529 0.0
ARG R:113 R:110 119.0 0.529 H -91.3 18.3 NA NA NA
ARG T:113 T:110 121.0 0.538 H -91.3 18.1 119.0 0.529 0.009 A:Q9UBF8:0.009
ARG X:113 X:110 119.0 0.529 H -91.6 18.4 NA NA NA
ARG Z:113 Z:110 122.0 0.542 H -91.2 18.4 NA NA NA
ARG DA:113 d:110 120.0 0.533 H -91.2 18.5 NA NA NA
ARG HA:113 h:110 120.0 0.533 H -91.6 18.3 NA NA NA
5c46 2 P62491 90.83 3e-144 X-RAY
 2016-01-20 ARG B:113 F:110 118.0 0.524 H -89.7 5.8 118.0 0.524 0.0
5c4g 1 P62491 90.83 3e-144 X-RAY
 2016-01-20 ARG A:113 B:110 174.0 0.773 H -61.6 -26.8 174.0 0.773 0.0
5euq 1 P62491 90.83 3e-144 X-RAY
 2016-02-24 ARG A:113 B:110 161.0 0.716 H -56.5 -38.0 161.0 0.716 0.0
6djl 1 P62491 90.83 3e-144 X-RAY
 2018-09-26 ARG A:113 A:110 165.0 0.733 H -61.4 -26.7 165.0 0.733 0.0
ARG F:113 F:110 156.0 0.693 H -65.0 -27.0 NA NA NA
ARG G:113 G:110 158.0 0.702 H -62.1 -29.3 NA NA NA
ARG H:113 H:110 158.0 0.702 H -67.5 -27.2 NA NA NA
4uj4 1 P62491 95.63 9e-128 X-RAY
 2015-08-12 ARG A:109 A:110 82.0 NA H -74.8 -8.9 NA NA NA
ARG D:109 D:110 151.0 0.671 H -79.6 3.9 151.0 0.671 0.0
ARG G:109 G:110 82.0 NA H -70.3 -5.3 82.0 NA NA
ARG J:109 J:110 78.0 NA H -74.5 -7.3 NA NA NA
4uj3 1 P62491 95.08 3e-127 X-RAY
 2015-08-12 ARG A:111 A:110 83.0 NA H -74.6 -9.3 83.0 NA NA
ARG D:111 D:110 150.0 0.667 H -80.0 3.4 NA NA NA
ARG G:111 G:110 80.0 NA H -70.2 -6.8 NA NA NA
ARG J:111 J:110 80.0 NA H -73.9 -7.9 NA NA NA
ARG M:111 M:110 89.0 NA H -75.8 -6.9 NA NA NA
ARG P:111 P:110 80.0 NA H -75.9 -7.1 NA NA NA
ARG S:111 S:110 146.0 0.649 H -74.9 -1.8 NA NA NA
ARG V:111 V:110 158.0 0.702 H -73.2 -6.3 NA NA NA
5jcz 1 P62491 97.74 3e-126 X-RAY
 2016-09-28 ARG A:112 A:110 128.0 0.569 H -62.9 -27.2 128.0 0.569 0.0 HOH
 2.536
 NH2
 O
ARG D:112 D:110 119.0 0.529 H -66.0 -29.0 NA NA NA
ARG F:112 I:110 81.0 NA H -70.4 -24.4 NA NA NA
4lwz 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 ARG A:110 A:110 124.0 0.551 H -63.0 -19.3 124.0 0.551 0.0 HOH
 8.899
 NH1
 O
ARG C:110 C:110 124.0 0.551 H -56.0 -27.3 NA NA NA
4lx0 1 P62491 97.74 3e-126 X-RAY
 2013-11-20 ARG A:110 A:110 120.0 0.533 H -78.1 -17.7 120.0 0.533 0.0 GOL
HOH
 9.715
2.515
 N
NH1
 C1
O
ARG C:110 C:110 80.0 NA H -58.4 -27.0 NA NA NA
4uj5 1 P62491 94.54 8e-126 X-RAY
 2015-08-12 ARG A:109 A:110 122.0 0.542 H -115.2 4.8 122.0 0.542 0.0
ARG B:109 B:110 47.0 NA H -110.7 2.7 NA NA NA
4c4p 1 P62491 97.69 2e-123 X-RAY
 2013-09-18 ARG A:110 A:110 151.0 0.671 H -56.0 -30.0 151.0 0.671 0.0 HOH
 1.664
 HE
 O
6ixv 2 P62491 97.69 2e-123 X-RAY
 2019-03-20 ARG E:112 E:110 147.0 0.653 T -70.9 -13.2 147.0 0.653 0.0
ARG F:112 F:110 152.0 0.676 T -76.4 -10.2 NA NA NA
ARG G:112 G:110 160.0 0.711 T -80.9 -10.6 NA NA NA
ARG H:112 H:110 148.0 0.658 T -74.4 -11.7 NA NA NA
1oiv 1 P24410 97.69 8e-123 X-RAY
 2004-01-08 ARG A:128 A:110 146.0 0.649 H -50.4 -55.3 146.0 0.649 0.0 HOH
 6.026
 O
 O
ARG B:128 B:110 159.0 0.707 H -66.0 -27.8 159.0 0.707 0.0 HOH
 2.867
 NH2
 O
2gzd 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 ARG A:110 A:110 163.0 0.724 H -54.9 -50.9 163.0 0.724 0.0 HOH
 2.929
 NH1
 O
ARG B:110 B:110 161.0 0.716 H -64.2 -51.9 161.0 0.716 0.0 HOH
 2.721
 NH1
 O
2gzh 1 P62491 97.11 4e-122 X-RAY
 2006-08-15 ARG A:110 A:110 144.0 0.64 H -61.9 -43.5 144.0 0.64 0.0 HOH
 2.643
 NH2
 O
1oiw 1 P24410 97.11 2e-121 X-RAY
 2004-01-08 ARG A:128 A:110 157.0 0.698 H -60.1 -39.8 157.0 0.698 0.0 HOH
 2.283
 NH2
 O
1oix 1 P24410 97.11 2e-121 X-RAY
 2005-01-25 ARG A:128 A:110 159.0 0.707 H -62.6 -39.9 159.0 0.707 0.0 HOH
 2.596
 O
 O
2hv8 1 P62491 97.06 3e-119 X-RAY
 2006-11-21 ARG A:107 A:110 163.0 0.724 H -62.1 -39.2 163.0 0.724 0.0 HOH
 2.722
 NH2
 O
ARG C:107 B:110 169.0 0.751 H -61.1 -41.2 NA NA NA
ARG E:107 C:110 204.0 0.907 H -53.3 -47.1 NA NA NA
6iy1 3 P62491 97.62 4e-119 X-RAY
 2019-12-18 ARG F:105 F:110 132.0 0.587 H -54.6 -38.5 NA NA NA
1yzk 1 P62491 97.62 1e-118 X-RAY
 2005-07-26 ARG A:119 A:110 178.0 0.791 H -62.5 -37.4 178.0 0.791 0.0 HOH
 2.791
 O
 O
6iy1 2 P62491 97.6 3e-118 X-RAY
 2019-12-18 ARG D:104 D:110 158.0 0.702 H -53.9 -44.7 NA NA NA
5ez5 1 P62491 97.02 4e-118 X-RAY
 2016-12-07 ARG A:103 A:110 187.0 0.831 H -56.9 -46.5 187.0 0.831 0.0 HOH
 7.353
 CG
 O
ARG B:103 B:110 184.0 0.818 H -61.4 -38.1 184.0 0.818 0.0 HOH
 8.626
 O
 O
2d7c 1 P62491 97.01 5e-117 X-RAY
 2006-09-26 ARG A:104 A:110 114.0 0.507 H -62.6 -25.3 114.0 0.507 0.0 MES
HOH
 4.117
2.703
 CG
NH2
 C2
O
ARG B:104 B:110 134.0 0.596 H -58.4 -36.3 NA NA NA
6iy1 1 P62491 97.58 2e-116 X-RAY
 2019-12-18 ARG A:102 A:110 163.0 0.724 H -63.6 -40.2 163.0 0.724 0.0 HOH
 7.353
 NH1
 O
ARG B:102 B:110 157.0 0.698 H -62.2 -42.1 NA NA NA
ARG C:102 C:110 166.0 0.738 H -62.3 -32.1 NA NA NA
ARG E:102 E:110 126.0 0.56 H -64.9 -42.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15907-f1 1 Q15907 100.0 1e-164 ARG A:110 A:110 120.0 0.533 H -63.9 -30.0
af-p62491-f1 1 P62491 91.28 6e-146 ARG A:110 A:110 115.0 0.511 H -63.7 -29.9