Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 8467093 | . | G | A | CCDS12201.1:NM_004218.3:c.360atG>atA_NP_004209.2:p.120M>I | Homo sapiens RAB11B, member RAS oncogene family (RAB11B), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
4ojk | 1 | Q15907 | 100.0 | 3e-146 |
X-RAY |
2014-08-06 | MET | A:115 | A:120 | 4.0 | 0.022 | E | -119.4 | 129.1 | 4.0 | 0.022 | 0.0 |
HOH |
5.090 |
N |
O |
||
MET | B:115 | B:120 | 3.0 | 0.016 | E | -125.9 | 124.3 | NA | NA | NA | |||||||||||||
5fbl | 2 | P62491 | 91.28 | 1e-145 |
X-RAY |
2016-12-28 | MET | B:125 | B:120 | 2.0 | 0.011 | E | -115.2 | 128.1 | 2.0 | 0.011 | 0.0 | ||||||
5fbq | 2 | P62491 | 91.28 | 1e-145 |
X-RAY |
2016-12-28 | MET | B:125 | B:120 | 3.0 | 0.016 | E | -115.0 | 128.0 | 3.0 | 0.016 | 0.0 | ||||||
2f9l | 1 | Q15907 | 99.49 | 2e-145 |
X-RAY |
2006-04-04 | MET | A:114 | A:120 | 2.0 | 0.011 | E | -110.6 | 123.1 | 2.0 | 0.011 | 0.0 |
HOH |
4.595 |
SD |
O |
||
2f9m | 1 | Q15907 | 99.49 | 2e-145 |
X-RAY |
2006-04-04 | MET | A:114 | A:120 | 2.0 | 0.011 | E | -113.7 | 119.6 | 2.0 | 0.011 | 0.0 |
HOH |
3.378 |
CE |
O |
||
5fbr | 2 | P62491 | 90.83 | 2e-144 |
X-RAY |
2016-12-28 | MET | B:125 | B:120 | 1.0 | 0.005 | E | -115.2 | 128.1 | 1.0 | 0.005 | 0.0 | ||||||
5fbv | 2 | P62491 | 90.83 | 2e-144 |
X-RAY |
2016-12-28 | MET | B:125 | B:120 | 0.0 | 0.0 | E | -114.9 | 128.1 | 0.0 | 0.0 | 0.0 | ||||||
5fbw | 2 | P62491 | 90.83 | 2e-144 |
X-RAY |
2016-12-28 | MET | B:125 | B:120 | 1.0 | 0.005 | E | -117.8 | 125.1 | 1.0 | 0.005 | 0.0 | ||||||
4d0l | 2 | P62491 | 90.83 | 3e-144 |
X-RAY |
2014-05-28 | MET | B:123 | B:120 | 2.0 | 0.011 | E | -115.4 | 128.2 | 2.0 | 0.011 | 0.0 | ||||||
MET | D:123 | D:120 | 3.0 | 0.016 | E | -116.1 | 127.9 | NA | NA | NA | |||||||||||||
MET | F:123 | F:120 | 3.0 | 0.016 | E | -116.0 | 125.7 | NA | NA | NA | |||||||||||||
4d0m | 2 | P62491 | 90.83 | 3e-144 |
X-RAY |
2014-05-28 | MET | B:123 | B:120 | 2.0 | 0.011 | E | -116.2 | 130.0 | 2.0 | 0.011 | 0.0 | ||||||
MET | D:123 | D:120 | 1.0 | 0.005 | E | -115.3 | 130.5 | 1.0 | 0.005 | 0.0 | |||||||||||||
MET | H:123 | H:120 | 2.0 | 0.011 | E | -115.7 | 129.9 | NA | NA | NA | |||||||||||||
MET | J:123 | J:120 | 2.0 | 0.011 | E | -115.2 | 130.3 | NA | NA | NA | |||||||||||||
MET | N:123 | N:120 | 2.0 | 0.011 | E | -115.4 | 130.0 | NA | NA | NA | |||||||||||||
MET | P:123 | P:120 | 1.0 | 0.005 | E | -115.4 | 129.9 | 1.0 | 0.005 | 0.0 | |||||||||||||
MET | R:123 | R:120 | 1.0 | 0.005 | E | -115.4 | 129.7 | NA | NA | NA | |||||||||||||
MET | T:123 | T:120 | 2.0 | 0.011 | E | -115.2 | 129.9 | 2.0 | 0.011 | 0.0 | |||||||||||||
MET | X:123 | X:120 | 2.0 | 0.011 | E | -115.0 | 129.6 | NA | NA | NA | |||||||||||||
MET | Z:123 | Z:120 | 2.0 | 0.011 | E | -115.1 | 130.1 | NA | NA | NA | |||||||||||||
MET | DA:123 | d:120 | 2.0 | 0.011 | E | -115.0 | 129.9 | NA | NA | NA | |||||||||||||
MET | HA:123 | h:120 | 2.0 | 0.011 | E | -114.8 | 129.7 | NA | NA | NA | |||||||||||||
5c46 | 2 | P62491 | 90.83 | 3e-144 |
X-RAY |
2016-01-20 | MET | B:123 | F:120 | 2.0 | 0.011 | E | -108.7 | 113.7 | 2.0 | 0.011 | 0.0 | ||||||
5c4g | 1 | P62491 | 90.83 | 3e-144 |
X-RAY |
2016-01-20 | MET | A:123 | B:120 | 2.0 | 0.011 | E | -110.3 | 109.6 | 2.0 | 0.011 | 0.0 | ||||||
5euq | 1 | P62491 | 90.83 | 3e-144 |
X-RAY |
2016-02-24 | MET | A:123 | B:120 | 1.0 | 0.005 | E | -121.7 | 117.1 | 1.0 | 0.005 | 0.0 | ||||||
6djl | 1 | P62491 | 90.83 | 3e-144 |
X-RAY |
2018-09-26 | MET | A:123 | A:120 | 2.0 | 0.011 | E | -132.7 | 134.2 | 2.0 | 0.011 | 0.0 | ||||||
MET | F:123 | F:120 | 9.0 | 0.049 | E | -131.1 | 134.7 | NA | NA | NA | |||||||||||||
MET | G:123 | G:120 | 5.0 | 0.027 | E | -135.1 | 134.4 | NA | NA | NA | |||||||||||||
MET | H:123 | H:120 | 9.0 | 0.049 | E | -128.3 | 132.2 | NA | NA | NA | |||||||||||||
4uj4 | 1 | P62491 | 95.63 | 9e-128 |
X-RAY |
2015-08-12 | MET | A:119 | A:120 | 1.0 | 0.005 | E | -116.9 | 133.5 | NA | NA | NA | ||||||
MET | D:119 | D:120 | 2.0 | 0.011 | E | -116.1 | 133.0 | 2.0 | 0.011 | 0.0 | |||||||||||||
MET | G:119 | G:120 | 1.0 | 0.005 | E | -116.6 | 133.1 | 1.0 | 0.005 | 0.0 | |||||||||||||
MET | J:119 | J:120 | 2.0 | 0.011 | E | -114.3 | 133.7 | NA | NA | NA | |||||||||||||
4uj3 | 1 | P62491 | 95.08 | 3e-127 |
X-RAY |
2015-08-12 | MET | A:121 | A:120 | 1.0 | 0.005 | E | -116.5 | 133.3 | 1.0 | 0.005 | 0.0 |
HOH |
9.753 |
O |
O |
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MET | D:121 | D:120 | 2.0 | 0.011 | E | -115.9 | 133.0 | NA | NA | NA | |||||||||||||
MET | G:121 | G:120 | 1.0 | 0.005 | E | -116.2 | 133.0 | NA | NA | NA | |||||||||||||
MET | J:121 | J:120 | 1.0 | 0.005 | E | -114.6 | 133.3 | NA | NA | NA | |||||||||||||
MET | M:121 | M:120 | 2.0 | 0.011 | E | -115.9 | 133.4 | NA | NA | NA | |||||||||||||
MET | P:121 | P:120 | 0.0 | 0.0 | E | -115.8 | 131.8 | NA | NA | NA | |||||||||||||
MET | S:121 | S:120 | 1.0 | 0.005 | E | -115.9 | 135.7 | NA | NA | NA | |||||||||||||
MET | V:121 | V:120 | 2.0 | 0.011 | E | -115.9 | 131.8 | NA | NA | NA | |||||||||||||
5jcz | 1 | P62491 | 97.74 | 3e-126 |
X-RAY |
2016-09-28 | MET | A:122 | A:120 | 3.0 | 0.016 | E | -114.3 | 125.2 | 3.0 | 0.016 | 0.0 |
ACT HOH |
8.598 3.515 |
SD CE |
O O |
||
MET | D:122 | D:120 | 3.0 | 0.016 | E | -118.4 | 124.4 | NA | NA | NA | |||||||||||||
MET | F:122 | I:120 | 5.0 | 0.027 | E | -122.6 | 121.5 | NA | NA | NA | |||||||||||||
4lwz | 1 | P62491 | 97.74 | 3e-126 |
X-RAY |
2013-11-20 | MET | A:120 | A:120 | 3.0 | 0.016 | E | -128.3 | 115.0 | 3.0 | 0.016 | 0.0 |
HOH |
7.320 |
CE |
O |
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MET | C:120 | C:120 | 1.0 | 0.005 | E | -105.1 | 123.2 | NA | NA | NA | |||||||||||||
4lx0 | 1 | P62491 | 97.74 | 3e-126 |
X-RAY |
2013-11-20 | MET | A:120 | A:120 | 3.0 | 0.016 | E | -120.6 | 124.0 | 3.0 | 0.016 | 0.0 |
HOH |
3.871 |
CE |
O |
||
MET | C:120 | C:120 | 2.0 | 0.011 | E | -111.6 | 124.5 | NA | NA | NA | |||||||||||||
4uj5 | 1 | P62491 | 94.54 | 8e-126 |
X-RAY |
2015-08-12 | MET | A:119 | A:120 | 2.0 | 0.011 | E | -117.3 | 135.9 | 2.0 | 0.011 | 0.0 |
HOH |
8.176 |
SD |
O |
||
MET | B:119 | B:120 | 5.0 | 0.027 | E | -115.5 | 131.3 | NA | NA | NA | |||||||||||||
4c4p | 1 | P62491 | 97.69 | 2e-123 |
X-RAY |
2013-09-18 | MET | A:120 | A:120 | 4.0 | 0.022 | E | -121.3 | 111.6 | 4.0 | 0.022 | 0.0 |
HOH |
4.980 |
HE1 |
O |
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6ixv | 2 | P62491 | 97.69 | 2e-123 |
X-RAY |
2019-03-20 | MET | E:122 | E:120 | 19.0 | 0.103 | E | -123.4 | 118.9 | 19.0 | 0.103 | 0.0 | ||||||
MET | F:122 | F:120 | 24.0 | 0.13 | E | -132.9 | 120.9 | NA | NA | NA | |||||||||||||
MET | G:122 | G:120 | 10.0 | 0.054 | E | -140.2 | 113.8 | NA | NA | NA | |||||||||||||
MET | H:122 | H:120 | 12.0 | 0.065 | E | -131.3 | 110.0 | NA | NA | NA | |||||||||||||
1oiv | 1 | P24410 | 97.69 | 8e-123 |
X-RAY |
2004-01-08 | MET | A:138 | A:120 | 3.0 | 0.016 | E | -123.7 | 124.9 | 3.0 | 0.016 | 0.0 |
HOH |
4.843 |
N |
O |
||
MET | B:138 | B:120 | 2.0 | 0.011 | E | -129.8 | 127.3 | 2.0 | 0.011 | 0.0 |
HOH |
4.552 |
CA |
O |
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2gzd | 1 | P62491 | 97.11 | 4e-122 |
X-RAY |
2006-08-15 | MSE | A:120 | A:120 | 2.0 | 0.011 | E | -121.1 | 123.1 | 2.0 | 0.011 | 0.0 |
HOH |
7.279 |
CE |
O |
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MSE | B:120 | B:120 | 2.0 | 0.011 | E | -127.6 | 115.9 | 2.0 | 0.011 | 0.0 |
HOH |
9.419 |
N |
O |
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2gzh | 1 | P62491 | 97.11 | 4e-122 |
X-RAY |
2006-08-15 | MSE | A:120 | A:120 | 5.0 | 0.027 | E | -109.0 | 133.6 | 5.0 | 0.027 | 0.0 |
PO4 HOH |
6.642 5.070 |
CE CE |
O3 O |
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1oiw | 1 | P24410 | 97.11 | 2e-121 |
X-RAY |
2004-01-08 | MET | A:138 | A:120 | 3.0 | 0.016 | E | -114.0 | 120.1 | 3.0 | 0.016 | 0.0 |
HOH |
5.695 |
CE |
O |
||
1oix | 1 | P24410 | 97.11 | 2e-121 |
X-RAY |
2005-01-25 | MET | A:138 | A:120 | 4.0 | 0.022 | E | -104.5 | 119.4 | 4.0 | 0.022 | 0.0 |
HOH |
5.585 |
SD |
O |
||
2hv8 | 1 | P62491 | 97.06 | 3e-119 |
X-RAY |
2006-11-21 | MET | A:117 | A:120 | 3.0 | 0.016 | E | -116.7 | 126.2 | 3.0 | 0.016 | 0.0 |
HOH |
4.073 |
CE |
O |
||
MET | C:117 | B:120 | 3.0 | 0.016 | E | -113.5 | 121.1 | NA | NA | NA | |||||||||||||
MET | E:117 | C:120 | 3.0 | 0.016 | E | -114.1 | 123.7 | NA | NA | NA | |||||||||||||
6iy1 | 3 | P62491 | 97.62 | 4e-119 |
X-RAY |
2019-12-18 | MET | F:115 | F:120 | 1.0 | 0.005 | E | -116.0 | 132.4 | NA | NA | NA | ||||||
1yzk | 1 | P62491 | 97.62 | 1e-118 |
X-RAY |
2005-07-26 | MET | A:129 | A:120 | 2.0 | 0.011 | E | -113.2 | 116.2 | 2.0 | 0.011 | 0.0 |
HOH |
3.915 |
CE |
O |
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6iy1 | 2 | P62491 | 97.6 | 3e-118 |
X-RAY |
2019-12-18 | MET | D:114 | D:120 | 3.0 | 0.016 | E | -124.9 | 124.3 | NA | NA | NA | ||||||
5ez5 | 1 | P62491 | 97.02 | 4e-118 |
X-RAY |
2016-12-07 | MET | A:113 | A:120 | 3.0 | 0.016 | E | -104.2 | 126.3 | 3.0 | 0.016 | 0.0 | ||||||
MET | B:113 | B:120 | 4.0 | 0.022 | E | -108.2 | 123.6 | 4.0 | 0.022 | 0.0 | |||||||||||||
2d7c | 1 | P62491 | 97.01 | 5e-117 |
X-RAY |
2006-09-26 | MSE | A:114 | A:120 | 3.0 | 0.016 | E | -120.7 | 124.7 | 3.0 | 0.016 | 0.0 |
HOH |
4.408 |
CE |
O |
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MSE | B:114 | B:120 | 3.0 | 0.016 | E | -121.1 | 124.1 | NA | NA | NA | |||||||||||||
6iy1 | 1 | P62491 | 97.58 | 2e-116 |
X-RAY |
2019-12-18 | MET | A:112 | A:120 | 3.0 | 0.016 | E | -118.5 | 123.4 | 3.0 | 0.016 | 0.0 |
HOH |
5.575 |
SD |
O |
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MET | B:112 | B:120 | 5.0 | 0.027 | E | -116.5 | 126.2 | NA | NA | NA | |||||||||||||
MET | C:112 | C:120 | 2.0 | 0.011 | E | -114.1 | 126.0 | NA | NA | NA | |||||||||||||
MET | E:112 | E:120 | 0.0 | 0.0 | E | -119.4 | 134.3 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q15907-f1 | 1 | Q15907 | 100.0 | 1e-164 | MET | A:120 | A:120 | 4.0 | 0.022 | E | -113.3 | 122.2 | |
af-p62491-f1 | 1 | P62491 | 91.28 | 6e-146 | MET | A:120 | A:120 | 3.0 | 0.016 | E | -117.3 | 126.5 |