Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187455196 . C A CCDS2292.1:NM_002210.4:c.131cCc>cAc_NP_002201.1:p.44P>H Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 PRO A:14 A:14 64.0 0.441 -62.3 142.1 64.0 0.441 0.0 NAG
 5.669
 O
 C8
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 PRO A:14 A:14 63.0 0.434 -61.6 140.4 63.0 0.434 0.0 NAG
 5.302
 O
 C8
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 PRO A:14 A:14 65.0 0.448 -60.1 140.7 65.0 0.448 0.0 NAG
 5.360
 O
 C8
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 PRO A:14 A:14 70.0 0.483 -70.5 150.7 70.0 0.483 0.0 NAG
 5.760
 CB
 O7
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 PRO A:14 A:14 62.0 0.428 -55.7 150.6 62.0 0.428 0.0 NAG
 5.314
 CB
 C8
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 PRO A:14 A:14 63.0 0.434 -62.0 155.0 63.0 0.434 0.0 NAG
 5.729
 CB
 C8
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 PRO A:14 A:14 89.0 0.614 -59.5 142.6 89.0 0.614 0.0 NAG
 5.613
 O
 C8
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 PRO A:14 A:14 66.0 0.455 S -66.8 156.0 66.0 0.455 0.0 NAG
 5.684
 CB
 O7
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 PRO A:14 A:14 69.0 0.476 -49.8 128.3 69.0 0.476 0.0 NAG
HOH
 5.799
4.144
 CB
CA
 O7
O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 PRO A:14 A:14 68.0 0.469 -59.2 135.7 68.0 0.469 0.0 NAG
HOH
 5.371
5.501
 O
O
 C8
O
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 PRO A:14 A:14 71.0 0.49 -65.0 140.1 71.0 0.49 0.0 NAG
 5.048
 O
 C8
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 PRO A:14 A:14 68.0 0.469 -64.4 151.3 68.0 0.469 0.0 NAG
 5.675
 O
 C8
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 PRO A:14 A:14 71.0 0.49 -66.8 150.0 71.0 0.49 0.0 NAG
 6.135
 CB
 C8
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 PRO A:14 A:14 79.0 NA S -53.0 137.9 79.0 NA NA
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 PRO A:14 A:14 80.0 NA S -51.9 137.3 80.0 NA NA
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 PRO A:14 A:14 81.0 NA S -52.3 136.2 81.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 PRO A:14 A:14 70.0 0.483 -66.0 153.8 70.0 0.483 0.0 NAG
 6.005
 O
 C8
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 PRO A:14 A:14 75.0 0.517 -54.7 144.3 75.0 0.517 0.0 NAG
 5.563
 CB
 O7
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 PRO A:14 A:14 72.0 0.497 -59.3 147.0 72.0 0.497 0.0 NAG
 5.347
 CB
 C8
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 PRO A:14 A:14 60.0 0.414 -47.3 139.0 60.0 0.414 0.0 NAG
 5.666
 O
 C8
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 PRO A:14 A:14 75.0 0.517 -58.4 136.2 75.0 0.517 0.0 NAG
 5.462
 O
 C8
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 PRO A:14 A:14 72.0 0.497 -64.7 144.0 72.0 0.497 0.0 NAG
 6.063
 O
 C8
4um8 1 P06756 99.66 0.0 X-RAY
 2014-11-12 PRO A:14 A:14 63.0 0.434 -61.0 137.7 63.0 0.434 0.0 NAG
HOH
 5.333
8.045
 O
O
 C8
O
PRO C:14 C:14 73.0 0.503 S -60.0 136.9 NA NA NA
4um9 1 P06756 99.66 0.0 X-RAY
 2014-11-12 PRO A:14 A:14 71.0 0.49 -56.5 141.3 NA NA NA
PRO C:14 C:14 70.0 0.483 -56.3 141.4 70.0 0.483 0.0 NAG
 5.366
 CB
 C8
5ner 5 P06756 99.83 0.0 EM
 2017-06-21 PRO E:14 A:14 70.0 0.483 -62.7 139.0 70.0 0.483 0.0
5net 5 P06756 99.83 0.0 EM
 2017-06-21 PRO E:14 A:14 71.0 0.49 -62.7 139.1 71.0 0.49 0.0
5ffg 1 P06756 99.5 0.0 X-RAY
 2017-01-25 PRO A:14 A:14 72.0 0.497 -61.0 144.1 72.0 0.497 0.0 NAG
 5.641
 CB
 O7
5ffo 1 P06756 99.5 0.0 X-RAY
 2017-01-25 PRO A:14 A:14 60.0 0.414 -56.4 140.4 60.0 0.414 0.0 NAG
 5.931
 CB
 C8
PRO E:14 E:14 61.0 0.421 -56.8 139.9 61.0 0.421 0.0 NAG
 6.199
 CB
 C8
6om1 1 P06756 99.33 0.0 X-RAY
 2019-12-11 PRO A:14 A:14 66.0 0.455 -56.5 139.3 66.0 0.455 0.0 NAG
HOH
 5.012
3.722
 HB2
HD3
 C8
O
PRO C:14 C:14 66.0 0.455 -57.2 133.9 NA NA NA
PRO E:14 E:14 64.0 0.441 -61.8 144.1 NA NA NA
PRO G:14 G:14 67.0 0.462 -58.7 143.7 NA NA NA
6om2 1 P06756 99.33 0.0 X-RAY
 2019-12-11 PRO A:14 A:14 70.0 0.483 -60.0 143.4 70.0 0.483 0.0 NAG
HOH
 5.510
4.157
 HB2
HD3
 O7
O
PRO C:14 C:14 60.0 0.414 -71.7 144.8 60.0 0.414 0.0 NAG
HOH
 4.571
4.932
 HB2
HA
 C8
O
5nem 5 P06756 99.16 0.0 EM
 2017-06-21 PRO E:14 A:14 73.0 0.503 -62.6 139.1 73.0 0.503 0.0
5neu 5 P06756 99.16 0.0 EM
 2017-06-21 PRO E:14 A:14 41.0 0.283 -65.7 157.9 41.0 0.283 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 PRO A:44 A:44 69.0 0.476 -61.2 142.3