Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187466783 | . | A | C | CCDS2292.1:NM_002210.4:c.221aAc>aCc_NP_002201.1:p.74N>T | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ASN | A:44 | A:44 | 116.0 | 0.725 | -86.5 | 111.7 | 116.0 | 0.725 | 0.0 |
NAG NAG |
1.499 6.765 |
ND2 ND2 |
C1 C1 |
|||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ASN | A:44 | A:44 | 120.0 | 0.75 | -87.7 | 107.4 | 120.0 | 0.75 | 0.0 |
NAG NAG |
1.496 6.768 |
ND2 ND2 |
C1 C1 |
|||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ASN | A:44 | A:44 | 115.0 | 0.719 | -86.7 | 107.8 | 115.0 | 0.719 | 0.0 |
NAG NAG |
1.500 6.777 |
ND2 ND2 |
C1 C1 |
|||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | ASN | A:44 | A:44 | 108.0 | 0.675 | -72.5 | 146.1 | 108.0 | 0.675 | 0.0 |
NAG NAG |
1.447 6.612 |
ND2 OD1 |
C1 O7 |
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| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | ASN | A:44 | A:44 | 102.0 | 0.637 | -83.6 | 151.8 | 102.0 | 0.637 | 0.0 |
NAG NAG |
1.439 6.568 |
ND2 ND2 |
C1 C1 |
|||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | ASN | A:44 | A:44 | 103.0 | 0.644 | -84.1 | 156.4 | 103.0 | 0.644 | 0.0 |
NAG NAG |
1.437 6.633 |
ND2 ND2 |
C1 C1 |
|||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | ASN | A:44 | A:44 | 132.0 | 0.825 | -91.4 | 109.7 | 128.0 | 0.8 | 0.025 |
C:None:0.025 |
NAG NAG |
1.455 6.651 |
ND2 ND2 |
C1 C1 |
||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | ASN | A:44 | A:44 | 114.0 | 0.713 | -67.4 | 144.6 | 114.0 | 0.713 | 0.0 |
NAG NAG |
1.440 6.609 |
ND2 ND2 |
C1 C1 |
|||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | ASN | A:44 | A:44 | 108.0 | 0.675 | -65.6 | 127.3 | 108.0 | 0.675 | 0.0 |
NAG NAG HOH |
1.443 6.485 7.386 |
ND2 ND2 N |
C1 C1 O |
|||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | ASN | A:44 | A:44 | 110.0 | 0.688 | -78.0 | 138.5 | 110.0 | 0.688 | 0.0 |
NAG NAG HOH |
1.445 6.589 4.131 |
ND2 ND2 C |
C1 C1 O |
|||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ASN | A:44 | A:44 | 110.0 | 0.688 | -80.0 | 148.2 | 110.0 | 0.688 | 0.0 |
NAG NAG |
1.441 6.633 |
ND2 ND2 |
C1 C1 |
|||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ASN | A:44 | A:44 | 110.0 | 0.688 | -86.8 | 142.8 | 110.0 | 0.688 | 0.0 |
NAG NAG |
1.436 6.641 |
ND2 ND2 |
C1 C1 |
|||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ASN | A:44 | A:44 | 111.0 | 0.694 | -69.4 | 128.7 | 111.0 | 0.694 | 0.0 |
NAG NAG |
1.441 6.615 |
ND2 ND2 |
C1 C1 |
|||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ASN | A:44 | A:44 | 85.0 | NA | -96.0 | 152.3 | 85.0 | NA | NA | |||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ASN | A:44 | A:44 | 84.0 | NA | -96.2 | 152.3 | 84.0 | NA | NA | |||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ASN | A:44 | A:44 | 85.0 | NA | -95.8 | 153.1 | 85.0 | NA | NA | |||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | ASN | A:44 | A:44 | 107.0 | 0.669 | -60.4 | 144.0 | 107.0 | 0.669 | 0.0 |
NAG NAG |
1.439 6.043 |
ND2 ND2 |
C1 C1 |
|||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | ASN | A:44 | A:44 | 102.0 | 0.637 | -65.1 | 147.2 | 102.0 | 0.637 | 0.0 |
NAG NAG |
1.445 6.302 |
ND2 ND2 |
C1 C1 |
|||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | ASN | A:44 | A:44 | 102.0 | 0.637 | -73.2 | 162.0 | 102.0 | 0.637 | 0.0 |
NAG NAG |
1.452 6.265 |
ND2 ND2 |
C1 C1 |
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| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | ASN | A:44 | A:44 | 103.0 | 0.644 | -114.9 | 149.9 | 103.0 | 0.644 | 0.0 |
NAG NAG |
1.450 6.514 |
ND2 ND2 |
C1 C1 |
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| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | ASN | A:44 | A:44 | 108.0 | 0.675 | -82.3 | 147.4 | 108.0 | 0.675 | 0.0 |
NAG NAG |
1.460 6.630 |
ND2 ND2 |
C1 C1 |
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| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | ASN | A:44 | A:44 | 107.0 | 0.669 | -71.4 | 132.2 | 107.0 | 0.669 | 0.0 |
NAG NAG |
1.441 6.627 |
ND2 ND2 |
C1 C1 |
|||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | ASN | A:44 | A:44 | 117.0 | 0.731 | -70.1 | 141.6 | 117.0 | 0.731 | 0.0 |
NAG NAG HOH |
1.460 6.713 8.109 |
ND2 ND2 ND2 |
C1 C1 O |
|||
| ASN | C:44 | C:44 | 114.0 | 0.713 | -72.2 | 141.4 | NA | NA | NA | ||||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | ASN | A:44 | A:44 | 103.0 | 0.644 | -67.0 | 134.9 | NA | NA | NA | |||||||
| ASN | C:44 | C:44 | 105.0 | 0.656 | -67.1 | 134.9 | 105.0 | 0.656 | 0.0 |
NAG HOH |
1.434 3.963 |
ND2 C |
C1 O |
||||||||||
| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | ASN | E:44 | A:44 | 108.0 | 0.675 | -68.4 | 142.4 | 108.0 | 0.675 | 0.0 | |||||||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | ASN | E:44 | A:44 | 106.0 | 0.662 | -68.4 | 142.3 | 106.0 | 0.662 | 0.0 | |||||||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | ASN | A:44 | A:44 | 110.0 | 0.688 | -67.9 | 136.7 | 110.0 | 0.688 | 0.0 |
NAG NAG HOH |
1.439 6.645 3.839 |
ND2 ND2 C |
C1 C1 O |
|||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | ASN | A:44 | A:44 | 108.0 | 0.675 | -66.3 | 136.7 | 108.0 | 0.675 | 0.0 |
NAG NAG |
1.443 6.612 |
ND2 ND2 |
C1 C1 |
|||
| ASN | E:44 | E:44 | 108.0 | 0.675 | -67.1 | 137.3 | 108.0 | 0.675 | 0.0 |
NAG NAG |
1.442 6.567 |
ND2 ND2 |
C1 C1 |
||||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | ASN | A:44 | A:44 | 106.0 | 0.662 | -67.9 | 154.7 | 106.0 | 0.662 | 0.0 |
NAG NAG HOH |
1.438 6.600 3.317 |
ND2 ND2 OD1 |
C1 C1 O |
|||
| ASN | C:44 | C:44 | 113.0 | 0.706 | -83.6 | 142.2 | NA | NA | NA | ||||||||||||||
| ASN | E:44 | E:44 | 103.0 | 0.644 | -66.3 | 164.3 | NA | NA | NA | ||||||||||||||
| ASN | G:44 | G:44 | 104.0 | 0.65 | -63.5 | 162.0 | NA | NA | NA | ||||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | ASN | A:44 | A:44 | 108.0 | 0.675 | -75.7 | 137.3 | 108.0 | 0.675 | 0.0 |
NAG NAG HOH |
1.440 6.598 9.391 |
ND2 ND2 O |
C1 C1 O |
|||
| ASN | C:44 | C:44 | 102.0 | 0.637 | -81.3 | 154.3 | 102.0 | 0.637 | 0.0 |
NAG NAG MAN HOH |
1.440 6.632 8.435 9.400 |
ND2 ND2 OD1 C |
C1 C1 O2 O |
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| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | ASN | E:42 | A:44 | 106.0 | 0.662 | -68.3 | 142.4 | 106.0 | 0.662 | 0.0 | |||||||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | ASN | E:42 | A:44 | 112.0 | 0.7 | -69.5 | 132.6 | 112.0 | 0.7 | 0.0 | |||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | ASN | A:74 | A:74 | 108.0 | 0.675 | -73.9 | 139.3 | ||