Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187466825 | . | A | C | CCDS2292.1:NM_002210.4:c.263aAa>aCa_NP_002201.1:p.88K>T | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | LYS | A:58 | A:58 | 69.0 | 0.345 | E | -98.2 | 108.6 | 69.0 | 0.345 | 0.0 | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | LYS | A:58 | A:58 | 67.0 | 0.335 | E | -94.1 | 115.5 | 67.0 | 0.335 | 0.0 | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | LYS | A:58 | A:58 | 71.0 | 0.355 | E | -92.7 | 117.8 | 71.0 | 0.355 | 0.0 | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | LYS | A:58 | A:58 | 63.0 | 0.315 | E | -87.3 | 125.9 | 63.0 | 0.315 | 0.0 | ||||||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | LYS | A:58 | A:58 | 59.0 | 0.295 | E | -99.2 | 139.8 | 59.0 | 0.295 | 0.0 | ||||||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | LYS | A:58 | A:58 | 68.0 | 0.34 | E | -101.8 | 113.7 | 68.0 | 0.34 | 0.0 | ||||||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | LYS | A:58 | A:58 | 50.0 | NA | E | -93.6 | 123.4 | 50.0 | NA | NA | ||||||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | LYS | A:58 | A:58 | 24.0 | NA | E | -87.8 | 125.4 | 24.0 | NA | NA | ||||||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | LYS | A:58 | A:58 | 65.0 | 0.325 | E | -104.8 | 103.7 | 65.0 | 0.325 | 0.0 | ||||||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | LYS | A:58 | A:58 | 64.0 | 0.32 | E | -90.5 | 126.6 | 64.0 | 0.32 | 0.0 |
HOH |
3.183 |
O |
O |
||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | LYS | A:58 | A:58 | 71.0 | 0.355 | E | -101.8 | 112.1 | 71.0 | 0.355 | 0.0 | ||||||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | LYS | A:58 | A:58 | 59.0 | 0.295 | E | -100.1 | 113.4 | 59.0 | 0.295 | 0.0 | ||||||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | LYS | A:58 | A:58 | 79.0 | 0.395 | E | -100.9 | 110.7 | 79.0 | 0.395 | 0.0 | ||||||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | LYS | A:58 | A:58 | 49.0 | NA | E | -95.8 | 129.5 | 49.0 | NA | NA | ||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | LYS | A:58 | A:58 | 50.0 | NA | E | -96.6 | 129.6 | 50.0 | NA | NA | ||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | LYS | A:58 | A:58 | 49.0 | NA | E | -96.2 | 132.0 | 49.0 | NA | NA | ||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | LYS | A:58 | A:58 | 74.0 | 0.37 | E | -98.6 | 120.7 | 74.0 | 0.37 | 0.0 | ||||||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | LYS | A:58 | A:58 | 68.0 | 0.34 | E | -98.2 | 122.5 | 68.0 | 0.34 | 0.0 | ||||||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | LYS | A:58 | A:58 | 80.0 | 0.4 | E | -97.1 | 114.4 | 80.0 | 0.4 | 0.0 | ||||||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | LYS | A:58 | A:58 | 40.0 | 0.2 | E | -97.7 | 118.4 | 40.0 | 0.2 | 0.0 | ||||||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | LYS | A:58 | A:58 | 77.0 | 0.385 | E | -106.8 | 105.9 | 77.0 | 0.385 | 0.0 | ||||||
| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | LYS | A:58 | A:58 | 76.0 | 0.38 | E | -102.7 | 104.4 | 76.0 | 0.38 | 0.0 | ||||||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | LYS | A:58 | A:58 | 78.0 | 0.39 | E | -90.7 | 95.1 | 78.0 | 0.39 | 0.0 |
HOH |
7.252 |
O |
O |
||
| LYS | C:58 | C:58 | 75.0 | 0.375 | E | -90.9 | 95.0 | NA | NA | NA | |||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | LYS | A:58 | A:58 | 68.0 | 0.34 | E | -102.2 | 112.4 | NA | NA | NA | ||||||
| LYS | C:58 | C:58 | 68.0 | 0.34 | E | -102.3 | 112.9 | 68.0 | 0.34 | 0.0 |
HOH |
6.969 |
N |
O |
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| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | LYS | E:58 | A:58 | 73.0 | 0.365 | E | -90.4 | 109.9 | 73.0 | 0.365 | 0.0 | ||||||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | LYS | E:58 | A:58 | 73.0 | 0.365 | E | -90.4 | 109.9 | 73.0 | 0.365 | 0.0 | ||||||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | LYS | A:58 | A:58 | 70.0 | 0.35 | E | -104.2 | 113.7 | 70.0 | 0.35 | 0.0 |
HOH |
8.204 |
NZ |
O |
||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | LYS | A:58 | A:58 | 79.0 | 0.395 | E | -100.5 | 111.3 | 79.0 | 0.395 | 0.0 | ||||||
| LYS | E:58 | E:58 | 79.0 | 0.395 | E | -100.6 | 110.2 | 79.0 | 0.395 | 0.0 | |||||||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | LYS | A:58 | A:58 | 75.0 | 0.375 | E | -101.1 | 119.9 | 75.0 | 0.375 | 0.0 |
HOH |
3.466 |
O |
O |
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| LYS | C:58 | C:58 | 66.0 | 0.33 | E | -100.3 | 117.8 | NA | NA | NA | |||||||||||||
| LYS | E:58 | E:58 | 74.0 | 0.37 | E | -99.1 | 114.6 | NA | NA | NA | |||||||||||||
| LYS | G:58 | G:58 | 77.0 | 0.385 | E | -92.0 | 117.6 | NA | NA | NA | |||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | LYS | A:58 | A:58 | 54.0 | 0.27 | E | -112.2 | 106.5 | 54.0 | 0.27 | 0.0 |
HOH |
7.249 |
H |
O |
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| LYS | C:58 | C:58 | 71.0 | 0.355 | E | -101.5 | 101.5 | 71.0 | 0.355 | 0.0 |
HOH |
4.057 |
HE3 |
O |
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| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | LYS | E:56 | A:58 | 75.0 | 0.375 | E | -90.4 | 109.9 | 75.0 | 0.375 | 0.0 | ||||||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | LYS | E:56 | A:58 | 55.0 | 0.275 | E | -97.6 | 108.2 | 55.0 | 0.275 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | LYS | A:88 | A:88 | 75.0 | 0.375 | E | -91.6 | 118.1 | |