Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187500898 | . | C | A | CCDS2292.1:NM_002210.4:c.721Cgg>Agg_NP_002201.1:p.241R>R | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ARG | A:211 | A:211 | 177.0 | 0.787 | -123.6 | -172.2 | 177.0 | 0.787 | 0.0 |
NAG NAG BMA MAN |
9.331 5.999 7.789 6.048 |
O O CB C |
O4 O7 O2 O6 |
|||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ARG | A:211 | A:211 | 218.0 | 0.969 | -119.8 | -173.4 | 218.0 | 0.969 | 0.0 |
NAG NAG BMA MAN MAN NAG |
9.094 5.810 5.847 6.187 9.641 8.331 |
O O NH2 C NH2 NH2 |
O4 O7 O2 O6 C1 C8 |
|||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | ARG | A:211 | A:211 | 184.0 | 0.818 | -128.3 | 157.5 | 184.0 | 0.818 | 0.0 |
NAG NAG BMA MAN |
8.300 4.942 7.410 6.136 |
O O CB CB |
O4 O7 O2 O6 |
|||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | ARG | A:211 | A:211 | 217.0 | 0.964 | -103.2 | 163.2 | 217.0 | 0.964 | 0.0 |
NAG NAG NAG BMA MAN |
6.421 8.672 5.642 5.529 6.393 |
NH1 O O NH2 NH2 |
C8 O4 C8 C6 C1 |
|||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | ARG | A:211 | A:211 | 207.0 | 0.92 | -114.9 | 159.1 | 207.0 | 0.92 | 0.0 |
NAG NAG NAG BMA BMA |
8.117 8.725 5.872 5.727 5.949 |
NH2 O O NH1 NH1 |
O7 O4 C8 O6 O2 |
|||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | ARG | A:211 | A:211 | 212.0 | 0.942 | -110.3 | 168.1 | 212.0 | 0.942 | 0.0 |
NAG NAG BMA BMA MAN MAN |
9.129 6.102 4.049 5.295 9.785 8.844 |
O O NH2 NH2 NH2 NH2 |
O4 C8 O6 C1 C1 C1 |
|||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | ARG | A:211 | A:211 | 92.0 | NA | -129.5 | 163.7 | 92.0 | NA | NA |
NAG NAG BMA MAN |
8.641 4.882 7.523 7.293 |
O O CB CB |
O4 O7 O6 C2 |
|||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | ARG | A:211 | A:211 | 75.0 | NA | -123.1 | 177.5 | 67.0 | NA | NA |
D:None:NA |
NAG NAG BMA MAN |
9.163 6.359 8.152 8.706 |
O O CB CB |
O4 C8 O6 O2 |
||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | ARG | A:211 | A:211 | 228.0 | 1.0 | -88.8 | 164.1 | 228.0 | 1.0 | 0.0 |
NAG NAG BMA MAN MAN MAN |
8.816 5.917 5.999 2.754 9.292 7.892 |
O O NE NH2 NH2 NH2 |
O4 O7 O6 O6 C1 O6 |
|||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | ARG | A:211 | A:211 | 218.0 | 0.969 | -124.4 | 164.3 | 218.0 | 0.969 | 0.0 |
NAG NAG NAG BMA MAN MAN MAN HOH |
6.914 8.680 5.584 5.269 9.633 9.718 5.791 3.648 |
NH2 O O NH1 NH1 NH1 NH1 O |
C8 O4 C8 C6 C1 O6 C1 O |
|||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ARG | A:211 | A:211 | 220.0 | 0.978 | -96.6 | 178.8 | 220.0 | 0.978 | 0.0 |
NAG NAG NAG BMA BMA MAN |
8.920 9.223 6.160 5.776 6.951 9.924 |
NH2 O O NH2 NH2 NH2 |
O7 O4 C8 O6 C1 C2 |
|||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ARG | A:211 | A:211 | 220.0 | 0.978 | -130.7 | 169.3 | 220.0 | 0.978 | 0.0 |
NAG NAG BMA BMA MAN |
8.954 6.184 5.006 4.462 9.274 |
O O NH2 NH2 NH2 |
O4 C8 O6 O2 C1 |
|||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | ARG | A:211 | A:211 | 223.0 | 0.991 | -116.2 | 158.1 | 223.0 | 0.991 | 0.0 |
NAG NAG BMA BMA |
8.835 5.887 6.908 6.525 |
O O NH1 NH1 |
O4 C8 O6 O6 |
|||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ARG | A:211 | A:211 | 82.0 | NA | -74.4 | 157.5 | 82.0 | NA | NA | |||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ARG | A:211 | A:211 | 80.0 | NA | -73.6 | 157.0 | 80.0 | NA | NA | |||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | ARG | A:211 | A:211 | 80.0 | NA | -72.9 | 156.4 | 80.0 | NA | NA | |||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | ARG | A:211 | A:211 | 213.0 | 0.947 | -93.3 | 169.7 | 213.0 | 0.947 | 0.0 |
NAG NAG NAG |
8.961 5.815 8.155 |
O O NH2 |
O4 O7 O6 |
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| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | ARG | A:211 | A:211 | 225.0 | 1.0 | -62.4 | 172.2 | 225.0 | 1.0 | 0.0 |
NAG NAG NAG |
9.227 6.268 8.671 |
O O NH2 |
O4 C8 C6 |
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| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | ARG | A:211 | A:211 | 219.0 | 0.973 | -98.8 | 169.1 | 219.0 | 0.973 | 0.0 |
NAG NAG NAG |
8.839 5.944 8.357 |
NH2 O NH2 |
O4 C8 O6 |
|||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | ARG | A:211 | A:211 | 224.0 | 0.996 | -113.7 | 165.5 | 224.0 | 0.996 | 0.0 |
NAG NAG NAG |
8.859 5.986 7.957 |
O O NH1 |
O4 C8 O6 |
|||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | ARG | A:211 | A:211 | 216.0 | 0.96 | -107.5 | 172.7 | 216.0 | 0.96 | 0.0 |
NAG NAG BMA BMA JUY |
9.213 5.833 7.071 4.701 8.482 |
O O NH1 NH1 O |
O4 O7 C6 O6 C20 |
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| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | ARG | A:211 | A:211 | 222.0 | 0.987 | -106.8 | 166.4 | 222.0 | 0.987 | 0.0 |
NAG NAG BMA BMA |
9.006 5.949 6.933 5.673 |
O O NH1 NH2 |
O4 C8 O6 O6 |
|||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | ARG | A:211 | A:211 | 228.0 | 1.0 | -80.3 | 166.0 | 228.0 | 1.0 | 0.0 |
NAG NAG NAG BMA MAN MAN HOH |
9.719 8.894 5.236 6.072 3.590 9.994 6.085 |
NH1 O O NH2 NH2 NH2 CG |
C8 O4 O7 O6 O6 C1 O |
|||
| ARG | C:211 | C:211 | 227.0 | 1.0 | -79.0 | 166.1 | NA | NA | NA | ||||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | ARG | A:211 | A:211 | 223.0 | 0.991 | -102.1 | 163.6 | NA | NA | NA | |||||||
| ARG | C:211 | C:211 | 212.0 | 0.942 | -101.1 | 163.7 | 212.0 | 0.942 | 0.0 |
NAG NAG NAG BMA MAN |
8.398 8.806 5.585 7.133 5.865 |
NH1 O O CB CD |
C8 O4 O7 O6 O6 |
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| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | ARG | E:211 | A:211 | 226.0 | 1.0 | -77.9 | 171.8 | 226.0 | 1.0 | 0.0 |
MAN NAG NAG |
9.336 5.467 9.259 |
CD O O |
C6 C8 O4 |
|||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | ARG | E:211 | A:211 | 225.0 | 1.0 | -77.9 | 171.8 | 225.0 | 1.0 | 0.0 |
NAG NAG MAN MAN MAN MAN |
8.021 4.041 6.802 2.424 3.119 6.045 |
O O O CD NH2 CD |
O4 O7 O2 C6 O6 O3 |
|||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | ARG | A:211 | A:211 | 218.0 | 0.969 | -100.7 | 163.5 | 218.0 | 0.969 | 0.0 |
NAG NAG NAG BMA MAN HOH |
8.487 8.849 5.653 8.902 8.844 2.357 |
NH1 O O CB CD NH1 |
C8 O4 C8 C6 C1 O |
|||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | ARG | A:211 | A:211 | 202.0 | 0.898 | -73.6 | 165.8 | 202.0 | 0.898 | 0.0 |
NAG NAG NAG BMA MAN MAN |
9.606 8.615 4.802 6.322 6.292 6.683 |
NH1 O O O CB CB |
C8 O4 O7 O6 C2 C1 |
|||
| ARG | E:211 | E:211 | 197.0 | 0.876 | -73.2 | 165.6 | 197.0 | 0.876 | 0.0 |
NAG NAG NAG BMA MAN MAN |
9.593 8.557 4.926 6.311 6.313 6.712 |
NH1 O O O CB CB |
C8 O4 O7 O6 C2 C1 |
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| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | ARG | A:211 | A:211 | 217.0 | 0.964 | -94.1 | 141.1 | 217.0 | 0.964 | 0.0 |
NAG NAG NAG BMA MAN MAN MAN HOH |
5.199 8.292 5.717 5.188 4.912 9.405 9.143 3.158 |
HH21 O O HH12 HH11 HH12 HH12 HG3 |
O7 O4 C8 O6 O5 C2 C2 O |
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| ARG | C:211 | C:211 | 218.0 | 0.969 | -116.4 | 142.3 | NA | NA | NA | ||||||||||||||
| ARG | E:211 | E:211 | 221.0 | 0.982 | -91.6 | 154.3 | NA | NA | NA | ||||||||||||||
| ARG | G:211 | G:211 | 224.0 | 0.996 | -93.7 | 155.1 | NA | NA | NA | ||||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | ARG | A:211 | A:211 | 218.0 | 0.969 | -100.8 | 165.5 | 218.0 | 0.969 | 0.0 |
NAG NAG NAG BMA MAN MAN HOH |
8.068 8.577 5.649 4.067 8.659 4.819 2.564 |
HH12 O O HH21 HH21 HE HH21 |
C8 O4 O7 C6 C1 O5 O |
|||
| ARG | C:211 | C:211 | 219.0 | 0.973 | -118.5 | 142.0 | 219.0 | 0.973 | 0.0 |
NAG NAG NAG BMA MAN MAN HOH |
7.963 8.280 5.208 5.953 6.375 9.746 3.424 |
HH11 O O HH21 HE HH21 H |
C1 O4 O7 C6 O6 C1 O |
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| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | ARG | E:209 | A:211 | 227.0 | 1.0 | -77.9 | 171.9 | 227.0 | 1.0 | 0.0 |
NAG NAG MAN MAN MAN MAN |
8.021 4.041 6.801 2.424 3.120 6.044 |
O O O CD NH2 CD |
O4 O7 O2 C6 O6 O3 |
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| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | ARG | E:209 | A:211 | 186.0 | 0.827 | -89.1 | -152.0 | 186.0 | 0.827 | 0.0 | |||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | ARG | A:241 | A:241 | 220.0 | 0.978 | -107.1 | 162.8 | ||