Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187501815 . T A CCDS2292.1:NM_002210.4:c.781Ttc>Atc_NP_002201.1:p.261F>I Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 PHE A:231 A:231 0.0 0.0 S -115.1 14.8 0.0 0.0 0.0 CA
CA
 7.988
4.575
 CE2
N
 CA
CA
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 PHE A:231 A:231 0.0 0.0 S -114.5 14.4 0.0 0.0 0.0 CA
CA
 7.847
4.638
 CE2
N
 CA
CA
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 PHE A:231 A:231 0.0 0.0 S -114.7 16.4 0.0 0.0 0.0 CA
CA
NAG
 7.866
4.569
9.911
 CE2
N
C
 CA
CA
O6
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 PHE A:231 A:231 4.0 0.019 -131.8 -38.5 4.0 0.019 0.0 NAG
CA
CA
 9.884
4.609
8.265
 C
N
CE1
 O6
CA
CA
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 PHE A:231 A:231 2.0 0.01 -121.6 22.7 2.0 0.01 0.0 NAG
NAG
MN
MN
 9.723
8.436
4.436
8.320
 O
O
N
CE1
 C6
O7
MN
MN
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 PHE A:231 A:231 2.0 0.01 -122.8 -7.5 2.0 0.01 0.0 NAG
MN
MN
 9.850
4.091
8.368
 C
N
CE1
 C6
MN
MN
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 PHE A:231 A:231 69.0 NA -121.4 -33.5 69.0 NA NA NAG
 8.504
 O
 C8
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 PHE A:231 A:231 5.0 0.024 -129.8 -59.6 5.0 0.024 0.0 NAG
NAG
MN
MN
 9.351
9.544
4.190
7.955
 C
O
N
CE1
 O6
C8
MN
MN
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 PHE A:231 A:231 7.0 0.033 -117.6 11.3 7.0 0.033 0.0 NAG
NAG
CA
CA
HOH
 9.205
7.236
4.425
8.469
6.479
 C
O
N
CE1
N
 C6
C8
CA
CA
O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 PHE A:231 A:231 1.0 0.005 -131.8 28.3 1.0 0.005 0.0 NAG
NAG
CA
CA
HOH
 9.941
8.984
4.379
8.392
6.139
 O
O
N
CE1
N
 O6
O7
CA
CA
O
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 PHE A:231 A:231 5.0 0.024 -102.5 -2.3 5.0 0.024 0.0 NAG
MN
MN
 9.099
4.597
8.129
 O
N
CE1
 O7
MN
MN
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 PHE A:231 A:231 2.0 0.01 -110.0 12.6 2.0 0.01 0.0 NAG
NAG
MN
MN
 9.236
9.647
4.430
8.482
 C
O
N
CE1
 O6
O7
MN
MN
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 PHE A:231 A:231 1.0 0.005 -112.9 23.1 1.0 0.005 0.0 MN
MN
 4.324
8.450
 N
CE1
 MN
MN
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 PHE A:231 A:231 67.0 NA -80.7 -49.4 67.0 NA NA
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 PHE A:231 A:231 64.0 NA -80.6 -49.1 64.0 NA NA
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 PHE A:231 A:231 65.0 NA -80.1 -48.7 65.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 PHE A:231 A:231 2.0 0.01 -116.8 -2.2 2.0 0.01 0.0 CA
CA
 4.968
8.841
 N
CE1
 CA
CA
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 PHE A:231 A:231 3.0 0.014 -114.2 -32.3 3.0 0.014 0.0 MN
MN
 4.459
8.168
 N
CE1
 MN
MN
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 PHE A:231 A:231 7.0 0.033 -117.2 -60.5 7.0 0.033 0.0 MN
MN
 4.580
8.345
 N
CE1
 MN
MN
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 PHE A:231 A:231 2.0 0.01 -130.8 18.7 2.0 0.01 0.0 CA
CA
 4.733
8.552
 N
CE1
 CA
CA
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 PHE A:231 A:231 2.0 0.01 -128.8 2.8 2.0 0.01 0.0 MN
MN
 4.126
8.439
 N
CE1
 MN
MN
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 PHE A:231 A:231 2.0 0.01 -121.4 7.3 2.0 0.01 0.0 MN
MN
 4.064
8.546
 N
CE1
 MN
MN
4um8 1 P06756 99.66 0.0 X-RAY
 2014-11-12 PHE A:231 A:231 4.0 0.019 -138.5 -8.5 4.0 0.019 0.0 NAG
NAG
MAN
MAN
CA
CA
HOH
 8.973
7.547
9.015
5.548
3.990
8.044
6.250
 C
O
O
O
N
CE1
N
 C6
C8
O3
O3
CA
CA
O
PHE C:231 C:231 5.0 0.024 S -137.4 -7.8 NA NA NA
4um9 1 P06756 99.66 0.0 X-RAY
 2014-11-12 PHE A:231 A:231 1.0 0.005 S -135.6 6.3 NA NA NA
PHE C:231 C:231 2.0 0.01 S -135.2 6.1 2.0 0.01 0.0 NAG
NAG
CA
CA
HOH
 9.284
7.977
4.237
8.176
6.297
 C
C
N
CE1
N
 C6
O7
CA
CA
O
5ner 5 P06756 99.83 0.0 EM
 2017-06-21 PHE E:231 A:231 7.0 0.033 S -134.5 -11.4 7.0 0.033 0.0 NAG
NAG
CA
CA
 9.221
8.269
4.436
8.181
 C
C
N
CE1
 C6
O7
CA
CA
5net 5 P06756 99.83 0.0 EM
 2017-06-21 PHE E:231 A:231 7.0 0.033 S -134.4 -11.4 7.0 0.033 0.0 NAG
NAG
CA
CA
 7.853
5.928
4.436
8.180
 O
O
N
CE1
 O4
O7
CA
CA
5ffg 1 P06756 99.5 0.0 X-RAY
 2017-01-25 PHE A:231 A:231 1.0 0.005 S -132.8 4.2 1.0 0.005 0.0 NAG
NAG
CA
CA
HOH
 8.872
6.910
8.265
4.126
3.639
 C
O
CE1
N
C
 O6
O7
CA
CA
O
5ffo 1 P06756 99.5 0.0 X-RAY
 2017-01-25 PHE A:231 A:231 8.0 0.038 -134.2 -33.7 8.0 0.038 0.0 NAG
NAG
MAN
MAN
CA
CA
 9.409
6.899
6.990
3.410
7.788
4.380
 C
C
O
O
CE1
N
 C6
C8
O6
O6
CA
CA
PHE E:231 E:231 8.0 0.038 -135.0 -34.1 8.0 0.038 0.0 NAG
NAG
MAN
MAN
CA
CA
 9.534
6.927
7.003
3.340
7.822
4.875
 C
C
O
O
CE1
N
 C6
C8
O6
O6
CA
CA
6om1 1 P06756 99.33 0.0 X-RAY
 2019-12-11 PHE A:231 A:231 22.0 0.105 S -135.7 20.5 22.0 0.105 0.0 NAG
CA
CA
HOH
 8.897
3.543
7.263
3.612
 O
H
HE1
O
 C8
CA
CA
O
PHE C:231 C:231 23.0 0.11 S -132.2 28.5 NA NA NA
PHE E:231 E:231 23.0 0.11 -134.9 9.2 NA NA NA
PHE G:231 G:231 22.0 0.105 S -133.7 17.0 NA NA NA
6om2 1 P06756 99.33 0.0 X-RAY
 2019-12-11 PHE A:231 A:231 1.0 0.005 S -136.8 20.1 1.0 0.005 0.0 NAG
NAG
MAN
MAN
MAN
CA
CA
HOH
 8.751
7.194
7.993
4.135
9.714
3.381
7.690
7.352
 H
O
O
O
C
H
HE1
HE1
 O6
O7
O3
O3
O3
CA
CA
O
PHE C:231 C:231 23.0 0.11 S -129.8 15.5 23.0 0.11 0.0 NAG
NAG
CA
CA
HOH
 9.145
6.463
3.422
7.668
3.303
 O
O
H
HE1
O
 O6
O7
CA
CA
O
5nem 5 P06756 99.16 0.0 EM
 2017-06-21 PHE E:229 A:231 7.0 0.033 S -134.4 -11.4 7.0 0.033 0.0 NAG
NAG
CA
CA
 7.853
5.929
4.436
8.180
 O
O
N
CE1
 O4
O7
CA
CA
5neu 5 P06756 99.16 0.0 EM
 2017-06-21 PHE E:229 A:231 0.0 0.0 S -134.9 13.2 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 PHE A:261 A:261 2.0 0.01 S -126.1 5.7