Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187501819 . A C CCDS2292.1:NM_002210.4:c.785aAt>aCt_NP_002201.1:p.262N>T Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 ASN A:232 A:232 60.0 0.375 S -142.6 1.5 60.0 0.375 0.0 CA
NAG
 2.377
5.611
 OD1
ND2
 CA
C6
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 ASN A:232 A:232 60.0 0.375 S -142.3 1.3 60.0 0.375 0.0 CA
NAG
 2.410
5.439
 OD1
ND2
 CA
O6
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 ASN A:232 A:232 63.0 0.394 S -144.4 0.3 63.0 0.394 0.0 CA
NAG
 2.408
5.337
 OD1
ND2
 CA
O6
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 ASN A:232 A:232 51.0 0.319 S -75.6 87.4 51.0 0.319 0.0 NAG
NAG
CA
 4.305
7.627
2.132
 ND2
CB
OD1
 O6
C7
CA
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 ASN A:232 A:232 34.0 0.212 S -133.7 -168.5 34.0 0.212 0.0 NAG
NAG
MN
 5.874
7.267
2.116
 ND2
CB
OD1
 O6
O7
MN
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 ASN A:232 A:232 64.0 0.4 S -111.2 -74.7 64.0 0.4 0.0 NAG
NAG
MN
 4.900
5.657
2.192
 ND2
ND2
OD1
 C6
O6
MN
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 ASN A:232 A:232 68.0 NA S -82.6 65.7 68.0 NA NA NAG
NAG
 6.682
5.805
 CB
CB
 O6
C8
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 ASN A:232 A:232 44.0 0.275 S -68.4 121.5 44.0 0.275 0.0 NAG
NAG
MN
 3.964
6.512
2.183
 ND2
ND2
OD1
 O6
N2
MN
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 ASN A:232 A:232 43.0 0.269 S -139.8 174.4 43.0 0.269 0.0 NAG
NAG
CA
HOH
 4.664
4.103
2.289
3.212
 ND2
CB
OD1
ND2
 C6
C8
CA
O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 ASN A:232 A:232 45.0 0.281 S -155.8 -164.4 45.0 0.281 0.0 NAG
NAG
CA
HOH
 5.212
5.526
2.315
2.679
 ND2
ND2
OD1
ND2
 O6
O7
CA
O
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASN A:232 A:232 39.0 0.244 S -111.6 -179.3 39.0 0.244 0.0 NAG
NAG
MN
 5.254
5.997
2.127
 ND2
ND2
OD1
 O6
O7
MN
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASN A:232 A:232 42.0 0.263 S -125.2 -176.5 42.0 0.263 0.0 NAG
NAG
MN
 4.523
6.359
2.270
 ND2
ND2
OD1
 O6
O7
MN
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASN A:232 A:232 42.0 0.263 S -157.8 164.4 42.0 0.263 0.0 NAG
MN
 6.067
2.158
 ND2
OD1
 O6
MN
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 ASN A:232 A:232 73.0 NA S -85.5 63.3 73.0 NA NA
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 ASN A:232 A:232 73.0 NA S -84.8 62.5 73.0 NA NA
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 ASN A:232 A:232 71.0 NA S -85.3 62.0 71.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 ASN A:232 A:232 76.0 0.475 S -132.2 119.2 76.0 0.475 0.0 NAG
CA
 5.597
3.184
 OD1
O
 N2
CA
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 ASN A:232 A:232 27.0 0.169 S -70.0 172.4 27.0 0.169 0.0 NAG
MN
 5.981
2.520
 ND2
OD1
 C8
MN
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 ASN A:232 A:232 52.0 0.325 S -61.2 124.4 52.0 0.325 0.0 NAG
MN
 4.947
2.919
 ND2
O
 N2
MN
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 ASN A:232 A:232 52.0 0.325 S -149.2 156.5 52.0 0.325 0.0 NAG
CA
 6.871
2.383
 ND2
OD1
 C2
CA
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 ASN A:232 A:232 53.0 0.331 S -123.0 -174.0 53.0 0.331 0.0 NAG
MN
 5.296
2.184
 ND2
OD1
 C6
MN
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 ASN A:232 A:232 46.0 0.287 S -129.8 -171.4 46.0 0.287 0.0 NAG
MN
 5.975
2.170
 ND2
OD1
 O5
MN
4um8 1 P06756 99.66 0.0 X-RAY
 2014-11-12 ASN A:232 A:232 65.0 0.406 S -117.0 10.1 65.0 0.406 0.0 NAG
NAG
BMA
MAN
MAN
CA
HOH
 3.828
3.930
9.419
8.177
4.854
2.301
3.402
 ND2
O
O
O
O
OD1
OD1
 C6
O7
C6
O3
O2
CA
O
ASN C:232 C:232 65.0 0.406 S -116.3 10.5 NA NA NA
4um9 1 P06756 99.66 0.0 X-RAY
 2014-11-12 ASN A:232 A:232 67.0 0.419 S -132.7 13.7 NA NA NA
ASN C:232 C:232 64.0 0.4 S -133.0 13.4 64.0 0.4 0.0 NAG
NAG
CA
HOH
 4.117
4.195
2.315
3.174
 ND2
ND2
OD1
ND2
 C6
O7
CA
O
5ner 5 P06756 99.83 0.0 EM
 2017-06-21 ASN E:232 A:232 72.0 0.45 S -110.3 3.2 72.0 0.45 0.0 NAG
NAG
CA
 4.186
4.592
2.384
 ND2
O
OD1
 C6
O7
CA
5net 5 P06756 99.83 0.0 EM
 2017-06-21 ASN E:232 A:232 73.0 0.456 S -110.3 3.3 73.0 0.456 0.0 NAG
NAG
MAN
CA
 3.865
3.170
9.377
2.384
 ND2
CB
O
OD1
 C6
O7
O1
CA
5ffg 1 P06756 99.5 0.0 X-RAY
 2017-01-25 ASN A:232 A:232 70.0 0.438 S -128.1 14.9 70.0 0.438 0.0 NAG
NAG
BMA
CA
HOH
 3.660
3.278
8.281
2.301
2.666
 ND2
O
O
OD1
OD1
 O6
C8
O6
CA
O
5ffo 1 P06756 99.5 0.0 X-RAY
 2017-01-25 ASN A:232 A:232 57.0 0.356 S -85.9 12.1 57.0 0.356 0.0 NAG
NAG
BMA
MAN
MAN
CA
 4.028
3.379
9.014
4.073
3.827
2.287
 ND2
ND2
O
O
C
OD1
 O6
C8
O6
O6
O6
CA
ASN E:232 E:232 57.0 0.356 S -86.7 11.8 57.0 0.356 0.0 NAG
NAG
BMA
MAN
MAN
CA
 4.134
3.382
9.075
4.131
3.777
2.309
 ND2
ND2
O
O
C
OD1
 O6
C8
O6
O6
O6
CA
6om1 1 P06756 99.33 0.0 X-RAY
 2019-12-11 ASN A:232 A:232 67.0 0.419 S -139.3 9.0 67.0 0.419 0.0 NAG
NAG
CA
HOH
 4.968
5.907
2.295
2.472
 HD22
HB2
OD1
HD22
 O6
C8
CA
O
ASN C:232 C:232 64.0 0.4 S -149.6 15.1 NA NA NA
ASN E:232 E:232 58.0 0.362 S -129.1 6.8 NA NA NA
ASN G:232 G:232 64.0 0.4 S -134.2 3.7 NA NA NA
6om2 1 P06756 99.33 0.0 X-RAY
 2019-12-11 ASN A:232 A:232 69.0 0.431 S -143.0 11.8 69.0 0.431 0.0 NAG
NAG
BMA
MAN
MAN
MAN
CA
PEG
 4.158
3.367
8.479
4.475
2.703
5.694
2.348
7.233
 HD21
HB2
O
O
HA
O
OD1
O
 O6
O7
O6
O3
O3
O3
CA
O1
ASN C:232 C:232 69.0 0.431 S -142.7 10.5 66.0 0.412 0.019 A:P06756:0.019
 NAG
NAG
NAG
CA
HOH
 8.589
5.520
2.549
2.337
4.101
 O
HD22
HD22
OD1
HA
 O7
C6
C8
CA
O
5nem 5 P06756 99.16 0.0 EM
 2017-06-21 ASN E:230 A:232 72.0 0.45 S -110.3 3.2 72.0 0.45 0.0 NAG
NAG
MAN
CA
 3.865
3.170
9.377
2.384
 ND2
CB
O
OD1
 C6
O7
O1
CA
5neu 5 P06756 99.16 0.0 EM
 2017-06-21 ASN E:230 A:232 59.0 0.369 S -144.2 -20.3 59.0 0.369 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 ASN A:262 A:262 59.0 0.369 S -124.5 -11.4