Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187503040 | . | T | A | CCDS2292.1:NM_002210.4:c.839tTg>tAg_NP_002201.1:p.280L>* | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | LEU | A:250 | A:250 | 39.0 | 0.229 | T | -90.5 | -34.6 | 39.0 | 0.229 | 0.0 | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | LEU | A:250 | A:250 | 47.0 | 0.276 | T | -93.2 | -33.7 | 47.0 | 0.276 | 0.0 | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | LEU | A:250 | A:250 | 39.0 | 0.229 | T | -87.9 | -35.1 | 39.0 | 0.229 | 0.0 | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | LEU | A:250 | A:250 | 35.0 | 0.206 | T | -57.0 | -36.7 | 35.0 | 0.206 | 0.0 |
NAG |
6.484 |
CD1 |
O7 |
||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | LEU | A:250 | A:250 | 23.0 | 0.135 | T | -62.5 | -34.5 | 23.0 | 0.135 | 0.0 |
NAG |
6.779 |
CG |
O7 |
||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | LEU | A:250 | A:250 | 46.0 | 0.271 | T | -64.0 | -35.5 | 46.0 | 0.271 | 0.0 |
NAG |
6.792 |
CG |
O7 |
||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | LEU | A:250 | A:250 | 19.0 | NA | T | -64.2 | -36.0 | 19.0 | NA | NA | ||||||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | LEU | A:250 | A:250 | 30.0 | 0.176 | T | -76.4 | -37.7 | 30.0 | 0.176 | 0.0 |
NAG NAG |
6.605 6.785 |
CD2 CD2 |
C4 O3 |
||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | LEU | A:250 | A:250 | 38.0 | 0.224 | T | -88.9 | -23.6 | 38.0 | 0.224 | 0.0 |
NAG NAG HOH |
6.190 7.953 4.231 |
CD2 CD2 O |
O6 C8 O |
||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | LEU | A:250 | A:250 | 32.0 | 0.188 | T | -67.8 | -33.9 | 32.0 | 0.188 | 0.0 |
NAG NAG HOH |
6.838 5.236 3.554 |
CG CD1 O |
O7 C6 O |
||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | LEU | A:250 | A:250 | 26.0 | 0.153 | T | -55.6 | -37.0 | 26.0 | 0.153 | 0.0 |
NAG |
6.048 |
CD1 |
O7 |
||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | LEU | A:250 | A:250 | 23.0 | 0.135 | T | -58.0 | -32.8 | 23.0 | 0.135 | 0.0 |
NAG |
6.621 |
CD1 |
O7 |
||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | LEU | A:250 | A:250 | 42.0 | 0.247 | T | -71.6 | -32.3 | 42.0 | 0.247 | 0.0 |
NAG |
5.087 |
CD1 |
O7 |
||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | LEU | A:250 | A:250 | 16.0 | NA | T | -70.4 | -36.9 | 16.0 | NA | NA | ||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | LEU | A:250 | A:250 | 17.0 | NA | T | -71.2 | -36.6 | 17.0 | NA | NA | ||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | LEU | A:250 | A:250 | 16.0 | NA | T | -73.3 | -36.2 | 16.0 | NA | NA | ||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | LEU | A:250 | A:250 | 25.0 | 0.147 | T | -66.7 | -43.9 | 25.0 | 0.147 | 0.0 |
NAG |
6.784 |
CD1 |
C2 |
||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | LEU | A:250 | A:250 | 42.0 | 0.247 | T | -73.8 | -42.3 | 42.0 | 0.247 | 0.0 |
NAG |
6.147 |
CD1 |
O3 |
||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | LEU | A:250 | A:250 | 23.0 | 0.135 | T | -67.8 | -51.3 | 23.0 | 0.135 | 0.0 |
NAG |
6.610 |
CD1 |
C3 |
||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | LEU | A:250 | A:250 | 29.0 | 0.171 | T | -83.7 | -27.8 | 29.0 | 0.171 | 0.0 |
NAG |
6.749 |
CG |
O7 |
||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | LEU | A:250 | A:250 | 42.0 | 0.247 | T | -76.8 | -24.9 | 42.0 | 0.247 | 0.0 |
NAG |
5.265 |
CD1 |
O7 |
||
| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | LEU | A:250 | A:250 | 42.0 | 0.247 | T | -70.8 | -29.2 | 42.0 | 0.247 | 0.0 |
NAG |
5.078 |
CD1 |
O7 |
||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | LEU | A:250 | A:250 | 41.0 | 0.241 | T | -91.3 | -34.7 | 41.0 | 0.241 | 0.0 |
HOH |
2.572 |
O |
O |
||
| LEU | C:250 | C:250 | 40.0 | 0.235 | T | -91.2 | -33.9 | NA | NA | NA | |||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | LEU | A:250 | A:250 | 44.0 | 0.259 | T | -73.3 | -31.5 | NA | NA | NA | ||||||
| LEU | C:250 | C:250 | 42.0 | 0.247 | T | -73.0 | -31.7 | 42.0 | 0.247 | 0.0 |
HOH |
7.200 |
O |
O |
|||||||||
| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | LEU | E:250 | A:250 | 27.0 | 0.159 | T | -85.1 | -25.3 | 27.0 | 0.159 | 0.0 | ||||||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | LEU | E:250 | A:250 | 27.0 | 0.159 | T | -85.1 | -25.2 | 27.0 | 0.159 | 0.0 | ||||||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | LEU | A:250 | A:250 | 47.0 | 0.276 | T | -67.0 | -29.7 | 47.0 | 0.276 | 0.0 |
HOH |
3.911 |
C |
O |
||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | LEU | A:250 | A:250 | 41.0 | 0.241 | T | -72.0 | -28.7 | 41.0 | 0.241 | 0.0 | ||||||
| LEU | E:250 | E:250 | 39.0 | 0.229 | T | -69.8 | -29.3 | 39.0 | 0.229 | 0.0 | |||||||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | LEU | A:250 | A:250 | 36.0 | 0.212 | T | -89.5 | -7.8 | 36.0 | 0.212 | 0.0 |
NAG HOH |
9.653 4.512 |
HD22 HD22 |
O6 O |
||
| LEU | C:250 | C:250 | 38.0 | 0.224 | T | -76.8 | -17.9 | NA | NA | NA | |||||||||||||
| LEU | E:250 | E:250 | 34.0 | 0.2 | T | -91.2 | -29.9 | NA | NA | NA | |||||||||||||
| LEU | G:250 | G:250 | 32.0 | 0.188 | T | -89.4 | -13.4 | NA | NA | NA | |||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | LEU | A:250 | A:250 | 47.0 | 0.276 | T | -58.4 | -24.1 | 47.0 | 0.276 | 0.0 |
NAG HOH |
9.436 3.167 |
HB2 HD11 |
O6 O |
||
| LEU | C:250 | C:250 | 46.0 | 0.271 | T | -68.3 | -17.4 | 46.0 | 0.271 | 0.0 |
NAG HOH |
9.894 4.792 |
HB2 HD21 |
O6 O |
|||||||||
| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | LEU | E:248 | A:250 | 27.0 | 0.159 | T | -85.1 | -25.2 | 27.0 | 0.159 | 0.0 | ||||||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | LEU | E:248 | A:250 | 26.0 | 0.153 | T | -123.7 | -59.6 | 26.0 | 0.153 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | LEU | A:280 | A:280 | 38.0 | 0.224 | T | -58.7 | -33.5 | |