Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187506292 . A C CCDS2292.1:NM_002210.4:c.1136gAt>gCt_NP_002201.1:p.379D>A Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 ASP A:349 A:349 23.0 0.153 S -86.9 80.0 23.0 0.153 0.0 CA
CA
 2.293
8.953
 OD1
O
 CA
CA
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 ASP A:349 A:349 26.0 0.173 S -86.5 77.4 26.0 0.173 0.0 CA
CA
 2.193
8.959
 OD1
O
 CA
CA
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 ASP A:349 A:349 25.0 0.167 S -84.7 73.0 25.0 0.167 0.0 CA
CA
 2.175
9.096
 OD1
O
 CA
CA
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 ASP A:349 A:349 23.0 0.153 S -93.6 88.0 23.0 0.153 0.0 CA
CA
 2.619
8.813
 OD2
O
 CA
CA
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 ASP A:349 A:349 18.0 0.12 -102.7 92.2 18.0 0.12 0.0 MN
MN
 2.488
8.307
 OD1
O
 MN
MN
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 ASP A:349 A:349 15.0 0.1 -106.1 93.1 15.0 0.1 0.0 MN
MN
 2.315
8.502
 OD1
O
 MN
MN
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 ASP A:349 A:349 38.0 NA S -80.4 76.4 38.0 NA NA
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 ASP A:349 A:349 13.0 0.087 -91.1 104.5 13.0 0.087 0.0 MN
MN
 2.158
8.537
 OD2
O
 MN
MN
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 ASP A:349 A:349 21.0 0.14 S -86.6 99.9 21.0 0.14 0.0 CA
CA
HOH
 2.337
8.913
4.506
 OD1
O
OD1
 CA
CA
O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 ASP A:349 A:349 22.0 0.147 -96.3 93.2 22.0 0.147 0.0 CA
CA
HOH
 2.356
8.796
4.547
 OD2
O
OD2
 CA
CA
O
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASP A:349 A:349 18.0 0.12 -102.0 107.6 18.0 0.12 0.0 MN
MN
 2.155
8.791
 OD1
O
 MN
MN
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASP A:349 A:349 20.0 0.133 -147.0 105.1 20.0 0.133 0.0 MN
MN
 2.371
8.438
 OD1
O
 MN
MN
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 ASP A:349 A:349 16.0 0.107 T -116.1 107.2 16.0 0.107 0.0 MN
MN
 2.144
8.821
 OD1
O
 MN
MN
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 ASP A:349 A:349 36.0 NA -87.7 93.5 36.0 NA NA
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 ASP A:349 A:349 34.0 NA -88.2 93.9 34.0 NA NA
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 ASP A:349 A:349 36.0 NA -90.2 87.2 36.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 ASP A:349 A:349 13.0 0.087 -151.3 90.0 13.0 0.087 0.0 CA
CA
 3.588
8.059
 OD1
O
 CA
CA
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 ASP A:349 A:349 19.0 0.127 -140.4 72.4 19.0 0.127 0.0 MN
MN
 2.950
9.244
 OD1
O
 MN
MN
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 ASP A:349 A:349 19.0 0.127 -158.5 66.1 19.0 0.127 0.0 MN
MN
 3.135
9.103
 OD1
O
 MN
MN
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 ASP A:349 A:349 19.0 0.127 -115.9 88.0 19.0 0.127 0.0 CA
CA
 2.555
8.696
 OD2
O
 CA
CA
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 ASP A:349 A:349 21.0 0.14 -117.4 96.3 21.0 0.14 0.0 MN
MN
 2.179
8.654
 OD1
O
 MN
MN
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 ASP A:349 A:349 20.0 0.133 T -122.9 95.2 20.0 0.133 0.0 MN
MN
 2.502
8.760
 OD1
O
 MN
MN
4um8 1 P06756 99.66 0.0 X-RAY
 2014-11-12 ASP A:349 A:349 20.0 0.133 S -89.8 89.4 20.0 0.133 0.0 SO4
CA
CA
HOH
 9.683
2.413
8.725
6.272
 O
OD1
O
O
 O3
CA
CA
O
ASP C:349 C:349 21.0 0.14 S -88.2 88.7 NA NA NA
4um9 1 P06756 99.66 0.0 X-RAY
 2014-11-12 ASP A:349 A:349 20.0 0.133 S -97.6 85.7 NA NA NA
ASP C:349 C:349 18.0 0.12 S -97.6 85.5 18.0 0.12 0.0 CA
CA
HOH
 8.988
2.409
6.591
 O
OD1
OD2
 CA
CA
O
5ner 5 P06756 99.83 0.0 EM
 2017-06-21 ASP E:349 A:349 23.0 0.153 S -90.8 83.0 23.0 0.153 0.0 CA
CA
 9.176
2.418
 O
OD1
 CA
CA
5net 5 P06756 99.83 0.0 EM
 2017-06-21 ASP E:349 A:349 23.0 0.153 S -90.7 82.9 23.0 0.153 0.0 CA
CA
 9.176
2.418
 O
OD1
 CA
CA
5ffg 1 P06756 99.5 0.0 X-RAY
 2017-01-25 ASP A:349 A:349 17.0 0.113 -99.0 87.9 17.0 0.113 0.0 CA
CA
HOH
 2.399
8.621
4.361
 OD1
O
OD1
 CA
CA
O
5ffo 1 P06756 99.5 0.0 X-RAY
 2017-01-25 ASP A:349 A:349 18.0 0.12 S -99.0 84.7 18.0 0.12 0.0 CA
CA
 2.589
8.571
 OD1
O
 CA
CA
ASP E:349 E:349 17.0 0.113 S -99.0 85.7 17.0 0.113 0.0 CA
CA
 2.429
8.744
 OD1
O
 CA
CA
6om1 1 P06756 99.33 0.0 X-RAY
 2019-12-11 ASP A:349 A:349 24.0 0.16 S -88.7 87.0 24.0 0.16 0.0 CA
CA
HOH
 2.323
8.594
4.401
 OD1
O
OD1
 CA
CA
O
ASP C:349 C:349 20.0 0.133 S -95.3 85.4 NA NA NA
ASP E:349 E:349 20.0 0.133 S -89.6 80.2 NA NA NA
ASP G:349 G:349 18.0 0.12 S -99.7 82.6 NA NA NA
6om2 1 P06756 99.33 0.0 X-RAY
 2019-12-11 ASP A:349 A:349 19.0 0.127 -88.1 88.1 19.0 0.127 0.0 CA
CA
HOH
 2.367
8.721
4.582
 OD1
O
OD1
 CA
CA
O
ASP C:349 C:349 21.0 0.14 -89.5 88.8 21.0 0.14 0.0 BMA
MAN
CA
CA
HOH
 8.108
4.841
2.412
8.586
1.829
 HB2
HB2
OD1
O
H
 O3
O3
CA
CA
O
5nem 5 P06756 99.16 0.0 EM
 2017-06-21 ASP E:347 A:349 21.0 0.14 S -90.7 82.9 21.0 0.14 0.0 CA
CA
 9.176
2.418
 O
OD1
 CA
CA
5neu 5 P06756 99.16 0.0 EM
 2017-06-21 ASP E:347 A:349 61.0 0.407 S -77.0 80.4 61.0 0.407 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 ASP A:379 A:379 22.0 0.147 S -75.1 92.6