Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 187516755 . A C CCDS2292.1:NM_002210.4:c.1444Agc>Cgc_NP_002201.1:p.482S>R Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6uja 1 P06756 99.9 0.0 EM
 2020-02-05 SER A:452 A:452 54.0 NA S -79.5 -22.4 54.0 NA NA
6ujb 1 P06756 99.9 0.0 EM
 2020-02-05 SER A:452 A:452 48.0 NA S -75.3 -19.8 48.0 NA NA
6ujc 1 P06756 99.9 0.0 EM
 2020-02-05 SER A:452 A:452 49.0 NA S -75.9 -14.7 49.0 NA NA
3ije 1 P06756 99.9 0.0 X-RAY
 2009-09-29 SER A:452 A:452 50.0 0.435 -76.1 -53.4 50.0 0.435 0.0 NAG
NAG
 8.684
6.662
 N
N
 O3
O6
6msl 1 P06756 99.9 0.0 X-RAY
 2019-10-23 SER A:452 A:452 52.0 0.452 S -65.3 -32.3 52.0 0.452 0.0 NAG
NAG
MAN
 9.519
7.694
9.973
 N
N
N
 C4
O6
O2
6msu 1 P06756 99.9 0.0 X-RAY
 2019-10-23 SER A:452 A:452 45.0 0.391 S -70.9 -25.2 45.0 0.391 0.0 NAG
NAG
MAN
 9.212
9.059
9.271
 N
N
N
 O6
O4
O2
6djp 1 P06756 99.9 0.0 EM
 2018-07-25 SER A:452 A:452 68.0 NA S -53.7 -27.4 68.0 NA NA
4o02 1 P06756 99.9 0.0 X-RAY
 2014-04-02 SER A:452 A:452 78.0 NA S -124.2 104.9 78.0 NA NA
4g1e 1 P06756 99.9 0.0 X-RAY
 2012-12-12 SER A:452 A:452 17.0 0.148 S -62.1 -56.9 17.0 0.148 0.0 NAG
NAG
BMA
MAN
HOH
 8.440
8.389
8.701
8.359
7.748
 N
N
N
N
OG
 O6
C5
O2
O4
O
4g1m 1 P06756 99.9 0.0 X-RAY
 2012-12-12 SER A:452 A:452 44.0 0.383 S -75.8 -36.4 44.0 0.383 0.0 NAG
NAG
HOH
 8.303
7.025
2.974
 N
N
OG
 O6
O6
O
4mmx 1 P06756 99.9 0.0 X-RAY
 2014-03-26 SER A:452 A:452 43.0 0.374 -43.3 -21.3 43.0 0.374 0.0 NAG
NAG
BMA
 8.724
8.282
9.470
 N
N
N
 C6
C5
O2
4mmy 1 P06756 99.9 0.0 X-RAY
 2014-03-26 SER A:452 A:452 45.0 0.391 S -69.5 -36.6 45.0 0.391 0.0 NAG
NAG
BMA
MAN
 9.127
8.230
9.859
9.253
 N
N
N
N
 C4
C5
C1
O2
4mmz 1 P06756 99.9 0.0 X-RAY
 2014-03-26 SER A:452 A:452 53.0 0.461 S -78.0 -20.7 53.0 0.461 0.0 NAG
NAG
 8.546
6.387
 N
N
 O3
O6
6avq 1 P06756 100.0 0.0 EM
 2017-11-01 SER A:452 A:452 47.0 NA -61.6 -27.0 47.0 NA NA
6avr 1 P06756 100.0 0.0 EM
 2017-11-01 SER A:452 A:452 47.0 NA -61.5 -27.0 47.0 NA NA
6avu 1 P06756 100.0 0.0 EM
 2017-11-01 SER A:452 A:452 46.0 NA -62.5 -22.3 46.0 NA NA
1jv2 1 14743192 99.9 0.0 X-RAY
 2001-10-17 SER A:452 A:452 44.0 0.383 -92.0 -32.1 44.0 0.383 0.0 NAG
 6.424
 N
 C6
1l5g 1 14743192 99.9 0.0 X-RAY
 2002-04-17 SER A:452 A:452 53.0 0.461 S -93.9 -39.1 53.0 0.461 0.0 NAG
 6.629
 N
 O4
1m1x 1 14743192 99.9 0.0 X-RAY
 2002-08-14 SER A:452 A:452 54.0 0.47 S -86.2 -37.1 54.0 0.47 0.0 NAG
 6.113
 N
 O6
1u8c 1 P06756 99.9 0.0 X-RAY
 2004-12-28 SER A:452 A:452 58.0 0.504 S -70.1 -54.9 58.0 0.504 0.0 NAG
 7.702
 N
 O4
6mk0 1 P06756 99.9 0.0 X-RAY
 2019-09-25 SER A:452 A:452 51.0 0.443 S -81.4 -9.0 51.0 0.443 0.0 NAG
NAG
 9.017
6.617
 N
N
 C4
O6
6naj 1 P06756 99.9 0.0 X-RAY
 2019-12-11 SER A:452 A:452 48.0 0.417 S -80.6 -15.1 48.0 0.417 0.0 NAG
NAG
 9.254
7.059
 N
N
 O3
O6
4um8 1 P06756 99.66 0.0 X-RAY
 2014-11-12 SER A:452 A:452 59.0 0.513 S -87.2 -25.4 59.0 0.513 0.0 NAG
NAG
NI
 8.488
9.410
7.330
 N
N
O
 O7
C1
NI
SER C:452 C:452 59.0 0.513 S -88.2 -25.9 NA NA NA
4um9 1 P06756 99.66 0.0 X-RAY
 2014-11-12 SER A:452 A:452 63.0 0.548 S -85.7 -20.8 NA NA NA
SER C:452 C:452 61.0 0.53 S -85.8 -21.1 61.0 0.53 0.0 NAG
NAG
BMA
MAN
HOH
 8.407
8.856
9.314
8.415
8.085
 N
N
N
N
O
 O7
C5
O6
O4
O
5ner 5 P06756 99.83 0.0 EM
 2017-06-21 SER E:452 A:452 58.0 0.504 S -91.2 -13.9 58.0 0.504 0.0 NAG
NAG
MAN
MAN
 7.643
8.543
9.703
6.256
 N
N
N
N
 O7
C5
C1
O6
5net 5 P06756 99.83 0.0 EM
 2017-06-21 SER E:452 A:452 58.0 0.504 S -91.4 -13.8 58.0 0.504 0.0 NAG
NAG
MAN
MAN
 7.642
8.543
9.704
6.257
 N
N
N
N
 O7
C5
C1
O6
5ffg 1 P06756 99.5 0.0 X-RAY
 2017-01-25 SER A:453 A:453 61.0 0.53 S -89.8 -20.6 61.0 0.53 0.0 NAG
NAG
BMA
HOH
 8.016
6.668
9.595
2.833
 N
N
N
N
 C8
O6
O2
O
5ffo 1 P06756 99.5 0.0 X-RAY
 2017-01-25 SER A:453 A:453 63.0 0.548 S -74.0 -33.7 63.0 0.548 0.0 NAG
NAG
BMA
 6.603
7.270
8.904
 N
N
N
 C8
O6
O2
SER E:453 E:453 66.0 0.574 S -74.1 -34.7 66.0 0.574 0.0 NAG
NAG
BMA
 6.764
7.687
9.594
 N
N
N
 C8
O6
O2
6om1 1 P06756 99.33 0.0 X-RAY
 2019-12-11 SER A:453 A:453 65.0 0.565 S -70.3 -43.8 65.0 0.565 0.0 NAG
NAG
BMA
MAN
 9.153
9.029
7.904
9.913
 N
H
H
H
 O5
N2
O2
C3
SER C:453 C:453 60.0 0.522 S -78.0 -33.9 NA NA NA
SER E:453 E:453 63.0 0.548 S -75.4 -21.2 NA NA NA
SER G:453 G:453 61.0 0.53 S -68.4 -46.1 NA NA NA
6om2 1 P06756 99.33 0.0 X-RAY
 2019-12-11 SER A:453 A:453 56.0 0.487 S -106.0 -27.9 56.0 0.487 0.0 NAG
NAG
BMA
MAN
HOH
 8.593
4.967
9.193
7.095
7.063
 H
H
H
H
N
 O7
O6
C2
O6
O
SER C:453 C:453 62.0 0.539 S -99.3 -8.1 62.0 0.539 0.0 NAG
NAG
MAN
HOH
 8.074
6.541
9.502
3.203
 N
H
H
HB3
 O6
O6
O3
O
5nem 5 P06756 99.16 0.0 EM
 2017-06-21 SER E:450 A:452 59.0 0.513 S -91.3 -13.8 59.0 0.513 0.0 NAG
NAG
MAN
MAN
 7.643
8.543
9.704
6.257
 N
N
N
N
 O7
C5
C1
O6
5neu 5 P06756 99.16 0.0 EM
 2017-06-21 SER E:450 A:452 76.0 0.661 S -70.9 -59.3 76.0 0.661 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p06756-f1 1 P06756 99.9 0.0 SER A:482 A:482 42.0 0.365 S -74.9 -29.1