Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr2 | 187516795 | . | G | A | CCDS2292.1:NM_002210.4:c.1484gGa>gAa_NP_002201.1:p.495G>E | Homo sapiens integrin subunit alpha V (ITGAV), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6uja | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | GLY | A:465 | A:465 | 97.0 | 1.0 | S | 80.6 | -70.1 | 97.0 | 1.0 | 0.0 | ||||||
| 6ujb | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | GLY | A:465 | A:465 | 99.0 | 1.0 | S | 82.1 | -67.3 | 99.0 | 1.0 | 0.0 | ||||||
| 6ujc | 1 | P06756 | 99.9 | 0.0 |
EM |
2020-02-05 | GLY | A:465 | A:465 | 98.0 | 1.0 | S | 81.4 | -71.8 | 98.0 | 1.0 | 0.0 | ||||||
| 3ije | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2009-09-29 | GLY | A:465 | A:465 | 73.0 | 0.973 | S | -67.0 | -51.3 | 73.0 | 0.973 | 0.0 | ||||||
| 6msl | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | GLY | A:465 | A:465 | 88.0 | 1.0 | T | 91.7 | -34.8 | 88.0 | 1.0 | 0.0 | ||||||
| 6msu | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-10-23 | GLY | A:465 | A:465 | 31.0 | 0.413 | S | 108.0 | 149.3 | 31.0 | 0.413 | 0.0 | ||||||
| 6djp | 1 | P06756 | 99.9 | 0.0 |
EM |
2018-07-25 | GLY | A:465 | A:465 | 84.0 | 1.0 | T | -81.6 | -2.0 | 84.0 | 1.0 | 0.0 | ||||||
| 4o02 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-04-02 | GLY | A:465 | A:465 | 80.0 | 1.0 | T | -65.2 | -50.5 | 80.0 | 1.0 | 0.0 | ||||||
| 4g1e | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | GLY | A:465 | A:465 | 82.0 | 1.0 | T | 88.3 | -10.5 | 82.0 | 1.0 | 0.0 | ||||||
| 4g1m | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2012-12-12 | GLY | A:465 | A:465 | 88.0 | 1.0 | S | 108.3 | -69.1 | 88.0 | 1.0 | 0.0 | ||||||
| 4mmx | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | GLY | A:465 | A:465 | 58.0 | 0.773 | S | 68.8 | 67.0 | 58.0 | 0.773 | 0.0 | ||||||
| 4mmy | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | GLY | A:465 | A:465 | 53.0 | 0.707 | S | 65.4 | 57.6 | 53.0 | 0.707 | 0.0 | ||||||
| 4mmz | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2014-03-26 | GLY | A:465 | A:465 | 60.0 | 0.8 | S | -67.1 | -56.2 | 60.0 | 0.8 | 0.0 | ||||||
| 6avq | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | GLY | A:465 | A:465 | 87.0 | 1.0 | T | -99.1 | 2.4 | 87.0 | 1.0 | 0.0 | ||||||
| 6avr | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | GLY | A:465 | A:465 | 86.0 | 1.0 | T | -97.1 | 2.9 | 86.0 | 1.0 | 0.0 | ||||||
| 6avu | 1 | P06756 | 100.0 | 0.0 |
EM |
2017-11-01 | GLY | A:465 | A:465 | 85.0 | 1.0 | T | -97.5 | 4.0 | 85.0 | 1.0 | 0.0 | ||||||
| 1jv2 | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2001-10-17 | GLY | A:465 | A:465 | 79.0 | 1.0 | S | -54.8 | -64.8 | 79.0 | 1.0 | 0.0 | ||||||
| 1l5g | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-04-17 | GLY | A:465 | A:465 | 55.0 | 0.733 | S | -47.7 | -56.8 | 55.0 | 0.733 | 0.0 | ||||||
| 1m1x | 1 | 14743192 | 99.9 | 0.0 |
X-RAY |
2002-08-14 | GLY | A:465 | A:465 | 73.0 | 0.973 | S | -64.7 | -82.2 | 73.0 | 0.973 | 0.0 | ||||||
| 1u8c | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2004-12-28 | GLY | A:465 | A:465 | 64.0 | 0.853 | S | -67.2 | -83.4 | 64.0 | 0.853 | 0.0 | ||||||
| 6mk0 | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-09-25 | GLY | A:465 | A:465 | 59.0 | 0.787 | S | -57.3 | -66.7 | 59.0 | 0.787 | 0.0 | ||||||
| 6naj | 1 | P06756 | 99.9 | 0.0 |
X-RAY |
2019-12-11 | GLY | A:465 | A:465 | 58.0 | 0.773 | S | -59.6 | -65.1 | 58.0 | 0.773 | 0.0 | ||||||
| 4um8 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | GLY | A:465 | A:465 | 82.0 | 1.0 | T | 109.2 | -42.2 | 82.0 | 1.0 | 0.0 | ||||||
| GLY | C:465 | C:465 | 89.0 | 1.0 | T | 108.4 | -41.4 | NA | NA | NA | |||||||||||||
| 4um9 | 1 | P06756 | 99.66 | 0.0 |
X-RAY |
2014-11-12 | GLY | A:465 | A:465 | 94.0 | 1.0 | T | 108.9 | -37.4 | NA | NA | NA | ||||||
| GLY | C:465 | C:465 | 93.0 | 1.0 | T | 109.1 | -27.8 | 93.0 | 1.0 | 0.0 |
HOH |
5.641 |
N |
O |
|||||||||
| 5ner | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | GLY | E:465 | A:465 | 89.0 | 1.0 | T | 110.2 | -29.2 | 89.0 | 1.0 | 0.0 | ||||||
| 5net | 5 | P06756 | 99.83 | 0.0 |
EM |
2017-06-21 | GLY | E:465 | A:465 | 89.0 | 1.0 | T | 110.2 | -29.2 | 89.0 | 1.0 | 0.0 | ||||||
| 5ffg | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | GLY | A:466 | A:466 | 91.0 | 1.0 | T | 102.5 | -4.2 | 91.0 | 1.0 | 0.0 |
HOH |
5.127 |
O |
O |
||
| 5ffo | 1 | P06756 | 99.5 | 0.0 |
X-RAY |
2017-01-25 | GLY | A:466 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| GLY | E:466 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 6om1 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | GLY | A:466 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| GLY | C:466 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| GLY | E:466 | E:466 | 81.0 | 1.0 | T | 86.0 | -2.3 | NA | NA | NA | |||||||||||||
| GLY | G:466 | G:466 | 71.0 | 0.947 | S | -94.9 | -60.4 | NA | NA | NA | |||||||||||||
| 6om2 | 1 | P06756 | 99.33 | 0.0 |
X-RAY |
2019-12-11 | GLY | A:466 | A:466 | 90.0 | 1.0 | S | 90.8 | -47.6 | 90.0 | 1.0 | 0.0 |
PEG |
9.881 |
H |
O4 |
||
| GLY | C:466 | C:466 | 80.0 | 1.0 | T | 99.5 | -18.0 | 80.0 | 1.0 | 0.0 |
HOH |
5.105 |
O |
O |
|||||||||
| 5nem | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | GLY | E:463 | A:465 | 90.0 | 1.0 | T | 110.2 | -29.2 | 90.0 | 1.0 | 0.0 | ||||||
| 5neu | 5 | P06756 | 99.16 | 0.0 |
EM |
2017-06-21 | GLY | E:463 | A:465 | 89.0 | 1.0 | T | 102.0 | -16.9 | 89.0 | 1.0 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p06756-f1 | 1 | P06756 | 99.9 | 0.0 | GLY | A:495 | A:495 | 88.0 | 1.0 | T | 85.5 | -0.9 | |